Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4729g00003 ATGTCGTCTGGGTTTTATTTGGAAGTAGTGATTGGAGCTCTGGTGCAGCTCGGGTTTGGTTATGCTTGTGTTTGCTGCATGCTACTCTGGCTAGTGTTTAATACTGCTGTTTCGATGAGTTTGAGGCCCAAACGGACATGCTATGGTGTTGTGAAATTCAAACACAAGCGGGTTCCATTTCATGACTCCAAAATGACAAGGAAACTGCGCATCATTTGTGACGATCCTGATGCTACTGACTCTTCCTCGGATGAGGATGGGCATTTTGAGAAAGGTAGGAAGGTGAAGAGGACTGTGATTGAGATTGCTCTTCCACTTGTTTCAGTTAACTCTGTCACTGCAGATGAAACTAGTACTGAGAGTTCAAACAATGATGAACTGAGCAAGATGAGGGTTTTGGCCAAAACCCCCTCAGTGAAGAGGCAATCTTGTGGTAAATACAAAGGTGTTCGGATGAGGAAATGGGGCAAATGGGCTGCAGAGATTCGTGACCCATTCAAGGGTGCGCGGCTCTGGTTGGGCACTTACAACACTGCAGAAGAGGCTTCTCAAGCCTATGAGAGCAAGAGGCTTGAATTTGAAGCCATGGCCAAGGCTCTGTCTAATGAGAAGACCAACAACAATAACAACAGCAGAAACAACAATGTTGTTCAAACTGTGGCTGCCCCAGAAAAGAATAGTTCCAACTACTGTGCTTCTTCTGGTGCAGTATCTGTATCAGACTCAAAGTCTGCTACTTTGGATGACTCAGAGAGTGTGTTGTCACACACATCAGCATCTTCTGTGCTTGAATTAGATACCTCTGCTTCCAATTTGATTGTGGGTGGTAAGGTTTCAAGCAGTGAAGATGTTGAGACCAAAGGTTTGGAGGCTGAATTTGCTGAGCTGGAATTTCCGGATTTGAGTATGCTGAATTTGCCATCCCCATCTGCAGTTTCTGCTGCTGCTGCTTCTGTTCCATCTCAGTTTGAGTTGGATTGGTTGGCGTTTGATGGTATCGAGCATGGCTTCGATGATGATCTGGGTGCTCTTGAGGACATTCAGATTTGTGGTTTTGATGACAACGAGCCTGGTGAGCTTCCTGATTGCGATTTTGATGACTTTGGTGCTGATGAGTTTGCTGGTTGGATTGAAGAACCCCTCAATATACCTTGCGTTTCTGACCCTGTTACAGTCTCCATTGCTAAGCATTTAAGCAATTAG 1203 0.4522 MSSGFYLEVVIGALVQLGFGYACVCCMLLWLVFNTAVSMSLRPKRTCYGVVKFKHKRVPFHDSKMTRKLRIICDDPDATDSSSDEDGHFEKGRKVKRTVIEIALPLVSVNSVTADETSTESSNNDELSKMRVLAKTPSVKRQSCGKYKGVRMRKWGKWAAEIRDPFKGARLWLGTYNTAEEASQAYESKRLEFEAMAKALSNEKTNNNNNSRNNNVVQTVAAPEKNSSNYCASSGAVSVSDSKSATLDDSESVLSHTSASSVLELDTSASNLIVGGKVSSSEDVETKGLEAEFAELEFPDLSMLNLPSPSAVSAAAASVPSQFELDWLAFDGIEHGFDDDLGALEDIQICGFDDNEPGELPDCDFDDFGADEFAGWIEEPLNIPCVSDPVTVSIAKHLSN 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4729g00003 400 Gene3D AP2/ERF domain 145 207 IPR036955 GO:0003700|GO:0006355
Mupr4729g00003 400 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 65 291 - -
Mupr4729g00003 400 PRINTS Ethylene responsive element binding protein signature 147 158 IPR001471 GO:0003700|GO:0006355
Mupr4729g00003 400 PRINTS Ethylene responsive element binding protein signature 169 185 IPR001471 GO:0003700|GO:0006355
Mupr4729g00003 400 CDD AP2 146 193 IPR001471 GO:0003700|GO:0006355
Mupr4729g00003 400 SMART rav1_2 146 210 IPR001471 GO:0003700|GO:0006355
Mupr4729g00003 400 ProSiteProfiles AP2/ERF domain profile. 146 203 IPR001471 GO:0003700|GO:0006355
Mupr4729g00003 400 SUPERFAMILY DNA-binding domain 146 193 IPR016177 GO:0003677
Mupr4729g00003 400 Pfam AP2 domain 146 195 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4729g00003 Mupr-Chr4729 19374 21296 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4729g00003 39 385 AP2-EREBP Transcription Factor Family AT1G68550 32.782 4.92e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mupr4729g00003 AP2 8.5e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4729g00003 - - gmx:102667919 473.396