LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr4713g00004	ATGGAGCAGTATGAAATTCTTGAACAGATTGGAAGAGGCTCTTTTGCTTCGGCTCTGCTTGTTAGGCACAAGCACGAAAACAAAAAGTATGTCCTTAAGAAGATCCGCCTTGCTCGCCAGACCGACAGAATCCGTAGATCTGCTCACCAAGAGATGGAGCTTATCTCTAAAGTTCGAAATCCATTTATCGTGGAGTATAAAGATTCTTGGGTTGAAAAGGGTTGTTTTGTATGTATCGTGATTGGCTATTGTGAAGGAGGAGATATGACGGAAGCTATTAAAAAGGCCAATGGCGTTCTTTTTCCTGAAGAGAGGCTTTGTAAGTGGCTGGTTCAACTGCTCATGGCGCTTGATTACTTGCATGCAAATCATATTCTACATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGATATCCGTCTAGGTGACTTTGGTCTTGCTAAAATGTTGACATGCGACGATCTTGCTTCCTCAGTGAGTGTTGTAGACGTACAGCAAAGATATTCTCTTGATCACTCTCACTTGAAATCTTACCGTGTTGTGGGGACTCCGAGTTATATGTGCCCAGAGCTTCTTGCTGATATACCCTATGGCTCTAAGTCAGATATCTGGTCTTTGGGATGCTGTGTGTATGAAATGGCTGCTCACAAGCCAGCTTTTAAAGCTCTTGATATGCAAGCACTGATTAACAAAATAAACAAGTCGTTAGTGGCTCCACTACCAACAGTGTATTCTGGTTCTTTTCGAGGACTTGTTAAGAGTATGCTGCGGAAGAATCCAGAGCTTAGGCCAAGTGCTGCAGAGTTACTAAATCATCCGCATCTTCAACCTTACATTCTTAAAATTCACTTGAAATTAAATCACCCCAGAAGAAGTACTTATCCATTTCAGTGGTCTGACTCAAACTATGTAAGGAGGACTCAGTTTGTAGAGCCAGAATCTGTTTCTACTCTTTCTGACAGAGATAAACGATTGTCATTCAGCAATGACAGGGCCTTGAATCCTAGTATTTCTGGAACTGAACTAGGTTCTGTGTGTTCTACTCAAAGAGCACTAGGATTCTCTACTTGTTCAAAAGAGAAACACTACGAACTATCTATTGGTTGTGTCCGTGAAGAATGCAATTCTAACAAGTCAAGAGACAACAAGTTCTCAACTGTTGATAGGGTGCCAAGATTTAGAGCAGCTAAAGAACATGCCACCCCCCGACGGCAGACAATACAATCAAAGATATTCCATACGGGTTCCAAGCGTGATTTACTTCCAGCATCTTCCACTCCAGGTGATAAATTTCCTCCTCCAACTCGCAGAGCTTCCCTTCCACTGCCTACCAGAACCATGGGCATGATCACCCCTTATAGAGGGAATGTTGGTCTTCTTCGAGGTGTGGACTCTCCTGATATTTCTGTTAATGCACCGCGAATTGACAAGATTGCTGAATTCCCTCTGGCCTCTTGTGAGGATCCTCTCTTCCCTGTCCGTGGAACTTCATCAACTTCGGCTCAGTGCTCTTCTGGTACCCCAAGGAGTGCTGACTGCTTAATCACGAAGGACAAGTGTACAATCCAAGTTGTGGACAAAGCCAGTGTCCCTTCCAGTGGCAGTGATGCTTGTCCTGCTGCTCCAGTTTCACATGGCAATGAATGCTCTGAACATGCTGTTTCCAGCCACTCCTCTGCTGAGTCTCGCCAGCGCAGGTTTGACACCAAGTCTTACCAGCAACGCGCTGAGGCATTGGAGGGTTTGCTTGAGTTTTCTGCACGGCTCCTTCAGCAACAGAGGTTTGACGAACTTGGGGTGTTGTTGAAGCCATTCGGTCCTGAGAAGGTATCCCCAAGGGAAACAGCTATTTGGTTGGCTAAGAGCTTCAAGGGAACTATCAAAACAAGAGGGGTGTTATTGAAGAGTTTGCTTTCAGTACACGGCTCCTACAGCGGCAGAGGTTTGAATAGCCCGGGGTGTTGTTGGAATCCATTCGGGCCTGAGATTTCTCCGAAGGAATTAAGGAAACAGCTTGTTGACTGA	2037	0.4472	MEQYEILEQIGRGSFASALLVRHKHENKKYVLKKIRLARQTDRIRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIVIGYCEGGDMTEAIKKANGVLFPEERLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTCDDLASSVSVVDVQQRYSLDHSHLKSYRVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKALDMQALINKINKSLVAPLPTVYSGSFRGLVKSMLRKNPELRPSAAELLNHPHLQPYILKIHLKLNHPRRSTYPFQWSDSNYVRRTQFVEPESVSTLSDRDKRLSFSNDRALNPSISGTELGSVCSTQRALGFSTCSKEKHYELSIGCVREECNSNKSRDNKFSTVDRVPRFRAAKEHATPRRQTIQSKIFHTGSKRDLLPASSTPGDKFPPPTRRASLPLPTRTMGMITPYRGNVGLLRGVDSPDISVNAPRIDKIAEFPLASCEDPLFPVRGTSSTSAQCSSGTPRSADCLITKDKCTIQVVDKASVPSSGSDACPAAPVSHGNECSEHAVSSHSSAESRQRRFDTKSYQQRAEALEGLLEFSARLLQQQRFDELGVLLKPFGPEKVSPRETAIWLAKSFKGTIKTRGVLLKSLLSVHGSYSGRGLNSPGCCWNPFGPEISPKELRKQLVD	678

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr4713g00004	678	ProSiteProfiles	Protein kinase domain profile.	4	279	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mupr4713g00004	678	SMART	serkin_6	4	279	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mupr4713g00004	678	FunFam	Serine/threonine-protein kinase Nek2	1	83	-	-
	Mupr4713g00004	678	SUPERFAMILY	Protein kinase-like (PK-like)	1	337	IPR011009	-
	Mupr4713g00004	678	Gene3D	Phosphorylase Kinase; domain 1	1	83	-	-
	Mupr4713g00004	678	MobiDBLite	consensus disorder prediction	421	451	-	-
	Mupr4713g00004	678	ProSitePatterns	Protein kinases ATP-binding region signature.	10	33	IPR017441	GO:0005524
	Mupr4713g00004	678	PANTHER	SERINE/THREONINE-PROTEIN KINASE NEK	1	588	-	-
	Mupr4713g00004	678	CDD	STKc_Nek	3	279	-	-
	Mupr4713g00004	678	Gene3D	Transferase(Phosphotransferase) domain 1	84	293	-	-
	Mupr4713g00004	678	Pfam	Protein kinase domain	4	278	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mupr4713g00004	678	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	125	137	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr4713g00004	Mupr-Chr4713	16609	22528	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr4713g00004	1	276	AGC Kinase Gene Family	AT1G48490	30.100	6.00e-33	134

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NEK	Mupr4713g00004		Pkinase	3.2e-59	CL0016