Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr470g00003 ATGGACACCAACACACTCTCACTGTCGTGGCCTCTTCCTACTTTGGGTCTTCTTCCGTCTGAAAAGCCAACTCCTACTTGTTACATCCTTCGTTCACATAACCATTTTCTCAAACACTTCTCCTCCATTACTAACCTTAATCGTACCTTCAAGTTCAGAACTCCACAAGCCATTCTAAATCCTTCCCCCATAGCTCCTTCAACGGAGATCACTCCCACTCTCAGAGAAATATGCCACACGCACGTTCCTGAACATATATTGCAAAGGCAATTTCAAAATCTTTTCCCTTTCTTCTTTCCTGCACTGTTTTGTGCTCAGAATTTGATAATATGTTTCAGGATGGAAGAGATTGGATATGTAATGCCTACCGATATCCAGAGGGAAGCATTGCCTTACCTCTTTTCAGGGCGTGATTGCATACTTCATGCTCAGACAGGTTCTGGGAAGACACTCACGTACCTGCTTTTGATCCATTCCGTCATCAATGCTGGAAAATCTTCCGTGCAAGCTCTAGTTGTGGTTCCAACCCGTGAACTTGGCATGCAAGTCACTAAGGTTGCTAGGACATTGGCTGCAAAGCCAATTGGAATCGATGGGGAGCAGAAGTCATGTTCCATCATGGCTCTGCTAGATGGAGGAACATTGAAAAGACACAAGAGTTGGATAAAGGCAGAGCCTCCAACAGTAGTGATTGCAACAGTAGGGAGTTTATGTCAAATGCTTGAAAGACATATTTTTTCGCTTGAAACTGTGCGGGTGCTGATTGTTGATGAGGTTGACTGCATTTTCAATTCTTCAAAGCAAGTGAGTTCTCTTCGAAAGATTTTGACTTCATATTCATCTTGCAATAACCGTCAGACAGTCTTTGCCAGTGCATCTATACCACAGCACAACCGATTTATTCATGACTCTGTGCAGCAGAAATGGACAAAGAGAGATGTGGTCCATATTCATGTCAGTGCAGTGGAGCCCATGCCATCTCGCCTATATCATAGATTTATAATATCTGATACCAAAAGAAAATTACAAACTCTGTTATCCTTGATACAATCTGATGCACCTGAGTCTGGTATTATATTTGTTGCTGAGCAGTCTGAGAAGTCAAAAAAGGCTGGAAATGCTCCATCAACATCCCTTCTAATTGACTTTTTGAATACATCATACCAAGGTGCTTTAGATATCCTCCTCCTTGAAGACAAAATGAATTTCAATTCACGAGCAGCTTCACTGTTGGAAGTTAGAAAAGGAGGTGGCTATCTTCTTGTAGCAACAGATATAGCTGCTAGGGGAGTTGACCTTCCAGAAATGTCTCATATTTACAACTTTGATCTGCCAAGGACTGCTATAGATTATCTTCATCGAGCAGGGCGAACTTGTAGAAAACCCTTTTCTGACATTAATTGTACTGTTACCAGCATTATAGTTCCAGATGAGCGATTTGTTCTGCAGAGATATGAAAATGAGTTGATGTTTACCTGTGAAGAACTTATTCCATAA 1497 0.4155 MDTNTLSLSWPLPTLGLLPSEKPTPTCYILRSHNHFLKHFSSITNLNRTFKFRTPQAILNPSPIAPSTEITPTLREICHTHVPEHILQRQFQNLFPFFFPALFCAQNLIICFRMEEIGYVMPTDIQREALPYLFSGRDCILHAQTGSGKTLTYLLLIHSVINAGKSSVQALVVVPTRELGMQVTKVARTLAAKPIGIDGEQKSCSIMALLDGGTLKRHKSWIKAEPPTVVIATVGSLCQMLERHIFSLETVRVLIVDEVDCIFNSSKQVSSLRKILTSYSSCNNRQTVFASASIPQHNRFIHDSVQQKWTKRDVVHIHVSAVEPMPSRLYHRFIISDTKRKLQTLLSLIQSDAPESGIIFVAEQSEKSKKAGNAPSTSLLIDFLNTSYQGALDILLLEDKMNFNSRAASLLEVRKGGGYLLVATDIAARGVDLPEMSHIYNFDLPRTAIDYLHRAGRTCRKPFSDINCTVTSIIVPDERFVLQRYENELMFTCEELIP 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr470g00003 498 Gene3D - 106 314 IPR027417 -
Mupr470g00003 498 Pfam Helicase conserved C-terminal domain 341 460 IPR001650 -
Mupr470g00003 498 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 341 498 IPR001650 -
Mupr470g00003 498 SMART ultradead3 118 333 IPR014001 -
Mupr470g00003 498 CDD SF2_C_DEAD 331 460 - -
Mupr470g00003 498 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 130 312 IPR014001 -
Mupr470g00003 498 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 113 489 - -
Mupr470g00003 498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 464 IPR027417 -
Mupr470g00003 498 CDD DEADc 114 296 - -
Mupr470g00003 498 Pfam DEAD/DEAH box helicase 123 296 IPR011545 GO:0003676|GO:0005524
Mupr470g00003 498 Gene3D - 326 497 IPR027417 -
Mupr470g00003 498 SMART helicmild6 378 462 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr470g00003 Mupr-Chr470 21744 26795 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr470g00003 118 487 Eukaryotic Initiation Factors Gene Family AT1G72730 27.851 1.47e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr470g00003 - - gmx:100786205 822.772