Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4693g00001 ATGGCTTTCTTTAAGCACTTTTCAGATGATGCAGTTTCACATGGTGTTGTGGAAGATAAGGGCCGAGGGCAGAATACCGATAGATCTCGTAGGTCAGTAGATAATGGATGTGCTTATGCAGCTTCTAGTGAAAAAGAATTTGATATGAAAATGGAGGTACAGTATGAGAGTGACAGTGAACCAGATGGTAGTAGGCTGCAAAAGGAGGCAACTACTGATGATCGAGTTGGTACAAGAGAATCAGACATAGAGAATATGGGCAGAAAAACAGCTTCTGTTGGAAGGTGGGGTACTACATTTTGGAAGGACTGCCAGCCTGTGTGCCCTCAGAATGGTTCTGAATTGGAACATGAATCAAAGAGTGGATCAGACAATAGAAATGCAGATGGGTCTGATGATAATTCGGCAGAAGGCAGAGGGGAAAGTTTAGATTCAGAAGATGATGATGGACCAAAGGATTCAGGAAAAGGTCCAAGAGGCCATTCTGATATTCCTGCTGAAGAGATGTTGTCTGATGAATATTATGAGCAGGATGGGGAAGAGCAAAGTGATTCCTTGCATTACAGGGGTTTCCGTCAATCCACTGGATCAGAGTCAAGGCCTCAACAGATGTCTACTATTGTCAAAAGGCATATGCATAAGTTTAGGATTTTAGAGGATACTGAAGGTAATGATGGTGATGCAGATTATGAAGAGGATGAAGCAGATGAAGATGATCCTGATGATGCAGACTTTGAGCCCTCAACAAGCAACCGTGCTGCAAATAAGGATAAAGATTGGGAAGGTGAAGACTCAGATGAAGCTGATGATAGTGATGAAGAAATAGATGTCTCAGATAACGATGATTCGTACTTTGATAAGAAGGCAAAGGGAAGGCAGCAAGGTAAAATTGGACGAAGTGTCAGATCTTCCAGAGATCACAAATATACTGTGTCTAGTCGACAAAGAAGAGTTAAGCCATCTTTCGATGATGAAGATGATGAGTCTACAGCGGATGATTCTGACAGCGAGAGCGATGAGGATTATAAAAGCACGAAAAAGCGAGGTGTGCATGTACGCAAGAATAATAGTCGTTCAGCGGCATCCACTAGTTTTTCTATGCGCAACAGTGAGATTCGCACTTCTAGTAGGACAGTTAGGAAAGTATCATATGTTGAAAGTGAAGAAAGTGAAGAAGCTGATGAAGGGAAGAAGAAGAAATCCCAAAAGGAAGAAATTGAAGAGGATGATGGAGACTCCATTGAAAAGGTGCTCTGGCATCAGCCGAAGGGCCTGGCTGCAGAGGCTCAAATGAATAATAGATCCACAGAACCTGTTTTAATGAGTCACTTGTTTGATTCTGAACCTAATTGGAATGATATGGAATTCTTGATAAAATGGAAAGGCCAGTCACATTTGCATTGTCAATGGAAGTCTTTTGCTGAGTTGCAAAATCTCAGTGGTTTTAAGAAAGTTTTGAATTATACCAAGAAAGTGACAGAGGACATCAGGTACAGGATGACAATCTCAAGGGAGGAGATTGAGGTCAATGATGTGAGTAAGGAGATGGATTTAGATATTATCAAGCAGAACAGTCAGGTGGAAAGAATAACTGCAGATAGGATTAGCAAAGATAACTCTGGCAATGTTATTCCTGAATACTTGGTCAAGTGGCAAGGATTATCTTATGCTGAAGTGACTTGGGAGAAGGACATTGATATTGCTTTTGCTCAACATGCTATAGATGACTATAAGGCTCGTGAAGCTGCAATGTCAGTTCAAGGAAAGATGGTAGATCTTCAGCGTAAGAAGAGCAAAGCAAGTTTGCGGAAACTTGATGAACAACCTGAATGGTTGAAGGGTGGAAAGCTCCGTGATTATCAACTTGAGGGTCTGAATTTTCTTGTTAACAGTTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGTCTTGGTAAAACTGTTCAGTCGGTATCAATGGTCGGTTTTCTACAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTTCCATTGTCTACCTTATCAAACTGGGCCAAAGAATTTAGGAAGTGGCTTCCTGATATGAATGTTATAGTCTATGTTGGTACTCGTGCAAGTAGAGAGGTTTGCCAACAATATGAATTTTATAATGATAAAAAGGCTGGCAGGCCTATAAAATTCAATGCACTTTTGACTACATACGAAGTAGTTCTGAAGGATAAGGCTGTTCTCTCCAAGATCAAGTGGAACTATCTAATGGTAGATGAGGCTCATAGACTAAAAAATAGCGAGGCACAATTGTACACAACACTTTCAGAATTTAGCACCAAGAACAAGTTGCTTGTCACTGGTACTCCGCTACAAAACAGTGTTGAAGAGCTATGGGCTTTGCTCCACTTTCTCGATCCTGTTAAGTTTAAGAGCAAGGATGACTTTGTTCAAAACTATAAGAATCTGAGTTCATTCAATGAGAATGAGCTTGCTAATCTTCATATGGAATTGAGGCCCCATATGCTTCGGAGAGTAATCAAAGATGTGGAGAAATCATTACCCCCCAAAATTGAGCGTATTCTTAGGGTTGAAATGTCTCCTCTTCAGAAGCAGTATTATAAGTGGATTTTGGAACGCAACTTTCATGACTTAAACAAAGGAGTTCGAGGGAATCAGGTTTCTCTTCTAAATATTGTGGTTGAATTGAAGAAATGCTGTAATCATCCCTTCCTGTTTGAGAGTGCTGACCATGGTTATGGTGGGGATTCTGTAAGTAGTGATAGCAGTAAATTAGAGAGAATTGTATTTAGCAGTGGCAAACTTGTCATACTTGATAAGCTACTTGTCAGATTGCATGAAACAAAGCATCGTGTCCTGATTTTCTCTCAGATGGTTAGGATGTTAGATATACTGGCAAAGTACATGTCACATCGAGGATTTCAATTTCAGAGGCTTGATGGCAGTACAAAAGCTGAAGTGCGACAACAGGCAATGGATCATTTCAATGCACCAGGTAGTGATGATTTTTGCTTCCTTCTCTCAACGCGAGCAGGAGGTTTGGGTATCAACCTTGCCACAGCAGACACTGTGATAATATTTGATTCAGATTGGAATCCTCAAAATGACCTGCAGGCAATGAGTAGAGCTCATCGAATTGGGCAACAAGAGGTTGTTAACATATATAGATTTGTCACAAGCAAAAGTGTTGAGGAAGATATTTTGGAACGTGCTAAGAAGAAGATGGTTCTCGACCACTTGGTGATTCAAAAACTAAATGCAGAGGGTAGATTGGAGAAGAAAGAAGCCAAAAAGGGGGGAAGCTATTTTGACAAAAATGAGCTGTCAGCAATATTAAGGTTTGGAGCAGAAGAGCTCTTTAAGGAAGAAAGAAATGATGAAGAAAGCAAGAAACGACTCTTAAGTATGGACATAGATGAGATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAGGAAAATGAGGGTGAAGAAGCACATGAATTGTTAAGTGCCTTTAAGGCAAGTTACTTGGACATTGTTGCTAATTTCTGTAATGATGAAGATGATGGAAGTTTCTGGAGTCGTTGGATAAAGCCAGATGCTGTTGCTCAGGCAGAGGAAGCTCTTGCTCCACGTGCTGCAAGGAATATTAAAAGCTATGCAGAGGATAATCAATTTGAAAGAAGTAGTAAAAGGAAAAAGAAGGAAAGTGAACTACCTGAGCGAGTTCAGAAACGCCGGAAAGCAGAGAATACAGCTCCTGCAACACCGATGATTGATGGAGCTTCGGCCCAAGTGAGAAACTGGTCATATGGGAATTTGTCTAAAAGAGATGCACTCCGTTTTTCTCGCTCAACACATGCCTCTCTCATATGGGCATGTGTGTCATATGCTCAAGCTAAGGATGACTATGAATCAATACATGCTTCATGTTTGTTATTTTCTTTACTTGTTATGAAATTTGGGAATGAGAGCCAAGTCAACTTAATTGCTGCAGAGGTTGGTGGTGCAGTTGGTTCAGCCCCACTCGAAGCACAAACTGAACTCTTCAATGCTCTAATTGATGGCTGTACAGAAGCAGTCGAACTTGGAAGTCTGGATCCCAAGGGGCCTTCTTTGGATTTCTTTGGTGTCTCAGTGAAGGCAAATGATTTACTTACCCGTGTTCAAGGACTTCAACTCCTGGCAAAGCGCATTAGTCGGTATGAAGATCCCATTGCACAATTCCGTGTGTTAACATATCTCAAACCTCCAAATTGGTCGAAAGGTTGTGGGTGGAATCAAATTGATGATGCACGATTTCTTCTTGGAGTATATTATCATGGATTTGGTAATTGGGAAAATATAAGATTAGATGAAAGGCTTGGTCTTACAAAAAAAATTGCACCAGTGGAACTTCAACACCATGAAACTTTCTTGCCACGAGCTCCAAATTTGAGAGACCGTGCTAATTCCCTATTGGAACAAGAACTTGCTTCTCACGGTGTGAAAAATACCTACAGCAAAGCTGGTAAGAAGCCTTCCAAGAAAGAAAGAGAACATCTTGTGAGCATATCGTCACGTGGGCAAGAGAAAAATAAACAATTGGGTTCTTCTAAATTTAATGTCCAAATAAGAAAGGATAGACTTCGGAAATCTCTAAAAGTTGAACCTATTGTAAAGGAGGAGGGTGAAATGTCTGATGATGAAGAAGTATATGAGCAGTTCAAGGAAGTAAAATGGATGGAATGGTGTCAAGATGTGATGGTTGAAGAAATGAAAACCTTGAAACGTCTTCATAGATTGCAGACAACCAGTGCCAATCTTCCAAAGGAAAAGGTGCTTTCAAAAATCCGCAACTACTTACAGCTTCTTGGGCGAAGGATAGATCTAATTGTGTTAGAGCATGAAGTGGAATCCTATAAGCAAGATAGAATGACCACGCGATTGTGGAAGTATGTTTCCACCTTTTCCCATCTTTCAGGGGAGAGGCTTCATCAAATTTATTCAAAACTTAAAGTGGAGCAAAATGTGACAGGGGTTGGCCCCTCTCATGCCAATGGTTCATTATCTGGTCCATTTAGCAAGAATGGAAACCCTAACCATTCTTATCCATTCCCTCGCCATATGGAGAAGCAAAGAGGAATAAAAAATATGACTACCTACCAAATGCCAGAAGCAATAAATAATTCTGGCATGTCTGAAGCATGGAAACGAAGAAGAAGAGATGAAAGCAATGGCCATTTCCAGGGTCAATTACCACCTCAAAGAACCATGAGTAATGGAATTCCGATTTCGGATCCTAACTCACTGGGTATCCTTGGAGCTGGACCATCTGACCAGCGTTTTGTTGGTGAGAAACCTTTTAAGAGGCGACCCAGTGGGTTTCCTTCAAGACAAGGATTCTCTTCATGA 5373 0.4076 MAFFKHFSDDAVSHGVVEDKGRGQNTDRSRRSVDNGCAYAASSEKEFDMKMEVQYESDSEPDGSRLQKEATTDDRVGTRESDIENMGRKTASVGRWGTTFWKDCQPVCPQNGSELEHESKSGSDNRNADGSDDNSAEGRGESLDSEDDDGPKDSGKGPRGHSDIPAEEMLSDEYYEQDGEEQSDSLHYRGFRQSTGSESRPQQMSTIVKRHMHKFRILEDTEGNDGDADYEEDEADEDDPDDADFEPSTSNRAANKDKDWEGEDSDEADDSDEEIDVSDNDDSYFDKKAKGRQQGKIGRSVRSSRDHKYTVSSRQRRVKPSFDDEDDESTADDSDSESDEDYKSTKKRGVHVRKNNSRSAASTSFSMRNSEIRTSSRTVRKVSYVESEESEEADEGKKKKSQKEEIEEDDGDSIEKVLWHQPKGLAAEAQMNNRSTEPVLMSHLFDSEPNWNDMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKVTEDIRYRMTISREEIEVNDVSKEMDLDIIKQNSQVERITADRISKDNSGNVIPEYLVKWQGLSYAEVTWEKDIDIAFAQHAIDDYKAREAAMSVQGKMVDLQRKKSKASLRKLDEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMVGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNVIVYVGTRASREVCQQYEFYNDKKAGRPIKFNALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLVTGTPLQNSVEELWALLHFLDPVKFKSKDDFVQNYKNLSSFNENELANLHMELRPHMLRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSVSSDSSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAKYMSHRGFQFQRLDGSTKAEVRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKENEGEEAHELLSAFKASYLDIVANFCNDEDDGSFWSRWIKPDAVAQAEEALAPRAARNIKSYAEDNQFERSSKRKKKESELPERVQKRRKAENTAPATPMIDGASAQVRNWSYGNLSKRDALRFSRSTHASLIWACVSYAQAKDDYESIHASCLLFSLLVMKFGNESQVNLIAAEVGGAVGSAPLEAQTELFNALIDGCTEAVELGSLDPKGPSLDFFGVSVKANDLLTRVQGLQLLAKRISRYEDPIAQFRVLTYLKPPNWSKGCGWNQIDDARFLLGVYYHGFGNWENIRLDERLGLTKKIAPVELQHHETFLPRAPNLRDRANSLLEQELASHGVKNTYSKAGKKPSKKEREHLVSISSRGQEKNKQLGSSKFNVQIRKDRLRKSLKVEPIVKEEGEMSDDEEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQLLGRRIDLIVLEHEVESYKQDRMTTRLWKYVSTFSHLSGERLHQIYSKLKVEQNVTGVGPSHANGSLSGPFSKNGNPNHSYPFPRHMEKQRGIKNMTTYQMPEAINNSGMSEAWKRRRRDESNGHFQGQLPPQRTMSNGIPISDPNSLGILGAGPSDQRFVGEKPFKRRPSGFPSRQGFSS 1790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4693g00001 1790 SMART ultradead3 613 812 IPR014001 -
Mupr4693g00001 1790 MobiDBLite consensus disorder prediction 382 415 - -
Mupr4693g00001 1790 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 937 1088 IPR001650 -
Mupr4693g00001 1790 MobiDBLite consensus disorder prediction 51 86 - -
Mupr4693g00001 1790 MobiDBLite consensus disorder prediction 281 324 - -
Mupr4693g00001 1790 MobiDBLite consensus disorder prediction 224 244 - -
Mupr4693g00001 1790 FunFam protein CHROMATIN REMODELING 5 isoform X2 527 579 - -
Mupr4693g00001 1790 MobiDBLite consensus disorder prediction 117 168 - -
Mupr4693g00001 1790 FunFam Chromo domain-containing protein 1 400 525 - -
Mupr4693g00001 1790 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 848 1078 - -
Mupr4693g00001 1790 MobiDBLite consensus disorder prediction 51 415 - -
Mupr4693g00001 1790 MobiDBLite consensus disorder prediction 188 206 - -
Mupr4693g00001 1790 FunFam Photoperiod-independent early flowering 1 587 861 - -
Mupr4693g00001 1790 Gene3D - 608 847 IPR038718 -
Mupr4693g00001 1790 SUPERFAMILY Chromo domain-like 504 580 IPR016197 -
Mupr4693g00001 1790 SMART helicmild6 963 1047 IPR001650 -
Mupr4693g00001 1790 Coils Coil 1131 1158 - -
Mupr4693g00001 1790 Gene3D - 527 579 - -
Mupr4693g00001 1790 MobiDBLite consensus disorder prediction 262 280 - -
Mupr4693g00001 1790 Gene3D - 848 1078 IPR027417 -
Mupr4693g00001 1790 CDD SF2_C_SNF 924 1058 - -
Mupr4693g00001 1790 SMART DUF4208_2 1553 1658 IPR025260 -
Mupr4693g00001 1790 ProSiteProfiles Chromo and chromo shadow domain profile. 525 589 IPR000953 -
Mupr4693g00001 1790 MobiDBLite consensus disorder prediction 11 29 - -
Mupr4693g00001 1790 Pfam Domain of unknown function (DUF4208) 1565 1657 IPR025260 -
Mupr4693g00001 1790 MobiDBLite consensus disorder prediction 1490 1524 - -
Mupr4693g00001 1790 MobiDBLite consensus disorder prediction 1497 1513 - -
Mupr4693g00001 1790 MobiDBLite consensus disorder prediction 355 381 - -
Mupr4693g00001 1790 SUPERFAMILY Chromo domain-like 409 492 IPR016197 -
Mupr4693g00001 1790 MobiDBLite consensus disorder prediction 1214 1252 - -
Mupr4693g00001 1790 MobiDBLite consensus disorder prediction 1214 1242 - -
Mupr4693g00001 1790 MobiDBLite consensus disorder prediction 1723 1790 - -
Mupr4693g00001 1790 Pfam SNF2-related domain 636 905 IPR000330 GO:0005524|GO:0140658
Mupr4693g00001 1790 Gene3D - 1382 1497 - -
Mupr4693g00001 1790 ProSiteProfiles Chromo and chromo shadow domain profile. 412 491 IPR000953 -
Mupr4693g00001 1790 MobiDBLite consensus disorder prediction 1735 1753 - -
Mupr4693g00001 1790 MobiDBLite consensus disorder prediction 1 36 - -
Mupr4693g00001 1790 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 841 1123 IPR027417 -
Mupr4693g00001 1790 Coils Coil 1077 1097 - -
Mupr4693g00001 1790 SMART chromo_7 523 582 IPR000953 -
Mupr4693g00001 1790 SMART chromo_7 410 493 IPR000953 -
Mupr4693g00001 1790 Gene3D - 398 525 - -
Mupr4693g00001 1790 Pfam Helicase conserved C-terminal domain 934 1047 IPR001650 -
Mupr4693g00001 1790 CDD CD1_tandem 410 490 - -
Mupr4693g00001 1790 Pfam Chromo (CHRromatin Organisation MOdifier) domain 526 580 IPR023780 -
Mupr4693g00001 1790 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 156 1719 - -
Mupr4693g00001 1790 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 604 838 IPR027417 -
Mupr4693g00001 1790 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 629 801 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4693g00001 Mupr-Chr4693 4026 30885 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4693g00001 639 1074 RAD5 or RAD16-like Gene Family AT1G02670 26.275 6.07e-36 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mupr4693g00001 SNF2_N 1.2e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4693g00001 K11367 - gmx:100792398 2729.51