Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4656g00003 ATGGCTTCTTCCTTGGATATGTCACTTGATGATAGAATAAAGAACAGGAGTAACAGAGGGAGAGGTAGAGGACGTGGCAGAGCCCAGCCTGGCCGTGGACCAAGTGGGGCTCTTGGTGGTGGAAGAATGGCTGGTGCTGTTAATAATAGAAGAATGGCTGGTGCTGGTAGTGGTGGAAGAACAACTGGTGCTGTTCGGAGAGGTCCTCTTATGGTTAACACACGACCATCATCATATGCTATTGCCAAGGCAAGCTCAAAAAAACGTGGATGCTTATACATAACTAGGCCCTTTCCATGGCAGCATGATTTGTTTGAAGATAGCCTAAGAGCTGCAGGGATTCAAGGAGTAGAAGTTGGCACCAAGTTGTATGTTTCCAATTTGGACCATGGTGTGACAAATGAAGACATAAGGGAACTTTTCTCTGAGCTTGGAAATTTGAAGCGTTTTGCTGTTCATTATGACAAAAATGGACATCCAAGTGGTTCGGCTGAAGTTGTTTATACTAGAAGAAGTGATGCATTTGCTGCTCTTAAACGATATAATAATGTACTTTTGGATGGAAGGCCCATGAAGATTGAGATCGTTGGTTCCAATGCAGAATTGCCTATAAGTGCTCGTGTGAATGTCACGGGGGTGAATGGGCGGAGGAAGCGGACTGTTGTAATGACGCCTAGAGGCAGTCAAGCTGGAGGTCCTGGAGGTCCTGCTATGCCTAATCGTGGTGCTGGTTGGGTACGTCGTGGTGGCATTAGGAGTGGCAGTGGACGTGGTCAAGGCCGAGGTCGTGGTCGCGGCAGGGGTGGGGGTGGTGGTCGAGGTCGTGGAAGAAAGGAGACCGTTGAGAAGTCAGCGGAGGAACTTGACAAGGAACTGGAGACCTATCATGCCGAGGCCATGAACATCTCTTGA 912 0.4857 MASSLDMSLDDRIKNRSNRGRGRGRGRAQPGRGPSGALGGGRMAGAVNNRRMAGAGSGGRTTGAVRRGPLMVNTRPSSYAIAKASSKKRGCLYITRPFPWQHDLFEDSLRAAGIQGVEVGTKLYVSNLDHGVTNEDIRELFSELGNLKRFAVHYDKNGHPSGSAEVVYTRRSDAFAALKRYNNVLLDGRPMKIEIVGSNAELPISARVNVTGVNGRRKRTVVMTPRGSQAGGPGGPAMPNRGAGWVRRGGIRSGSGRGQGRGRGRGRGGGGGRGRGRKETVEKSAEELDKELETYHAEAMNIS 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4656g00003 303 MobiDBLite consensus disorder prediction 224 303 - -
Mupr4656g00003 303 Coils Coil 278 298 - -
Mupr4656g00003 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 191 IPR000504 GO:0003723
Mupr4656g00003 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 198 IPR000504 GO:0003723
Mupr4656g00003 303 SMART rrm1_1 122 194 IPR000504 GO:0003723
Mupr4656g00003 303 MobiDBLite consensus disorder prediction 1 44 - -
Mupr4656g00003 303 Pfam C-terminal duplication domain of Friend of PRMT1 247 297 IPR025715 -
Mupr4656g00003 303 SUPERFAMILY RNA-binding domain, RBD 115 195 IPR035979 GO:0003676
Mupr4656g00003 303 Gene3D - 116 197 IPR012677 -
Mupr4656g00003 303 SMART FoP_duplication_2 230 303 IPR025715 -
Mupr4656g00003 303 CDD RRM_THOC4 121 195 - -
Mupr4656g00003 303 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 300 - -
Mupr4656g00003 303 MobiDBLite consensus disorder prediction 272 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4656g00003 Mupr-Chr4656 30670 34915 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4656g00003 120 195 Eukaryotic Initiation Factors Gene Family AT2G23350 36.842 3.60e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4656g00003 K12881 - gmx:100801491 411.764