LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr4630g00002	ATGGATGAAGCACAGGGTAGTTCAAGTTCCACGCCTCCTTTCTTGGCCAAGACTTATGAGATGGTGGATGATCCTTCCTTGGATTCGATTGTTTCGTGGGGTGTCACTAGCAAAAGTTTCATTGTATGGAATCCCCCAGAATTTGCAAGGGATTTGCTGCCTAGATTCTTCAAGCACAACAACTTCTCAAGTTTCATCAGGCAGCTGAATACATATGGATTTAGAAAAATTGACCCAGAACAATGGGAATTTGCCAATGATGATTTTGTAAGAGGGCAACCTCATCTTATGAAGAACATCCATAGACGGAAGCCAGTTCATAGCCATTCTTTGCAGAATCTCCAAGCACAGGGCCAGCTGCTAGGGGAGTCAGAAAGGCAGAGTTTTACTGATGAAATAGAGAAGCTTAAACATGATAAAGAAAGACTTCTTGTGGAATTACAGAGACATCAACATGAGTGGCAGACATATGAGATACAAATACATTGCTCGAAAGATCGGTTGGATAAATTGGAACAGAAACAACGAAGGATGGTTTCTTCCATTTCTCACCTATTGCAGAAAGCTGTGATTGCTGTAAATATCTTGCCTTTGACAGAAACCATGGATAGAAAAAGAAGGTTGCCGAGAAGTAGCCTCTTTAATGATGAAGCTAGCATTGAAGATGCTATTGAAACTTCTCAAATGTTGCCGAGAGAAAATGCAGATAATGCCTCTATATTGACATTAAACATGCAGCGGTTGGATCAGCTTGAATCATCCATGGCGTTTTGGGAGGCTATTGTACATGATGTTGGTGACACCTTTGTTCAAATTCAGTCAAACATGGATTTTGATGAATCTACAAGTTGTGCTGATAGTCCGTCTATATCTTGTGTGCAATTAGATGTTGAAGTTCGGCCTAAGTCATCTGGAATTGACATGAACTCTGAGCCAACTACAGCTACTGTTCTTGAGCCTGTTGCATCAAAAGAACAACCTGCGGGAACCACTGTCGCAGCAACTGGTGTTAATGATGTATTCTGGGAACAGTTCTTGACAGAGGATCCTGGTGCATCAGAAACACAGGAAGTACAGTCAGAAAGAAAGGATTATGATGGCAGAAAGAGTGAAGGAAAACCTAGTGACGTTAGCAAATTTTGGTGGACCATACGGAATACAAATAATCTTCCAGAACAGATGGGGCATGTTGGTCAAGTTGAGAAAACTTAG	1212	0.4134	MDEAQGSSSSTPPFLAKTYEMVDDPSLDSIVSWGVTSKSFIVWNPPEFARDLLPRFFKHNNFSSFIRQLNTYGFRKIDPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLQNLQAQGQLLGESERQSFTDEIEKLKHDKERLLVELQRHQHEWQTYEIQIHCSKDRLDKLEQKQRRMVSSISHLLQKAVIAVNILPLTETMDRKRRLPRSSLFNDEASIEDAIETSQMLPRENADNASILTLNMQRLDQLESSMAFWEAIVHDVGDTFVQIQSNMDFDESTSCADSPSISCVQLDVEVRPKSSGIDMNSEPTTATVLEPVASKEQPAGTTVAATGVNDVFWEQFLTEDPGASETQEVQSERKDYDGRKSEGKPSDVSKFWWTIRNTNNLPEQMGHVGQVEKT	403

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr4630g00002	403	SMART	hsfneu3	10	103	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr4630g00002	403	MobiDBLite	consensus disorder prediction	355	375	-	-
	Mupr4630g00002	403	SUPERFAMILY	"Winged helix" DNA-binding domain	10	103	IPR036390	-
	Mupr4630g00002	403	Gene3D	-	6	104	IPR036388	-
	Mupr4630g00002	403	PRINTS	Heat shock factor (HSF) domain signature	65	77	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr4630g00002	403	PRINTS	Heat shock factor (HSF) domain signature	14	37	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr4630g00002	403	PRINTS	Heat shock factor (HSF) domain signature	52	64	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr4630g00002	403	Coils	Coil	126	153	-	-
	Mupr4630g00002	403	MobiDBLite	consensus disorder prediction	348	378	-	-
	Mupr4630g00002	403	Pfam	HSF-type DNA-binding	14	103	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr4630g00002	403	ProSitePatterns	HSF-type DNA-binding domain signature.	53	77	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr4630g00002	403	FunFam	Heat shock transcription factor 1	7	104	-	-
	Mupr4630g00002	403	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	5	233	IPR027725	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr4630g00002	Mupr-Chr4630	23550	24885	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr4630g00002	7	403	HSF	AT4G18880	53.071	7.06e-125	365

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Mupr4630g00002		HSF_DNA-bind	8.7e-31	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr4630g00002	K09419		-	gmx:100798004	727.628