Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4628g00002 ATGCGAGTGCTGTACAATTTGGAAGAGCGCTCTTTCTCCGCCACTCCCACTTCTCTTTCGTACGATTATTACAATCTCTCTTCGCAATCACTTTTTCTAGGTGAAGCCAAATCGACCAAGGGTGTTAAGTGCGATGATAAAATCCCGCAGGTCAATTGGTCGCATCATGTCAATGCTCATGAGAATTTCTCCTTCCAAGCCAAGTTTTTGAGCTCCAATTTTCTGTTCTCTGTCCCACCCAAGAAGCCTTGTCATGAAGAACAAAACCCTGGGATTGCTGGGTTTGTTGTTAGACGAAGTGAAAATATTCAAGGTTCACAGAGAGTACAAGTTGAGAAGGCTTGGATTGCCCTTTCAAGTCTACAAAATTCTAGTAGGAACTATGTCCAACCTGGAAAAACAGTTGAGGTTACTCCTCTGCTTCGTGAAGATAGGAGAACAACTTCTTTCCAAGGGGGCTATGAGAATAACGAACGTAGGTGTCCCGATGCCACTACAACTCCGATTGTTATTAATCATAGTTCTCTGGGTTTGGATGGTTTGGTGAACAATCATCCTAAGTACACAGGCCAAATCAATGAGACTTTGAAATGTATGGCTGATGATATTGGTGATGATGACATACTTGAGAACATTGATGTTGACCAAATTGTCGAGAATTACCAGTCAACTTGCACTCCCAAACCATCAATATCCAAGTTTCCTCCTATAACACCAACTGCTGATAAAGATAATTTTGCTAGACAGAGGGATAATGTTTTGCCGCCAGAACTGTGTTTAGATTGCATCCATGGTTACAAGTTAGGGCTTTGCCCTGAAGCAGCAAGTCATTTGCAGGAATTGAAGGATAATCTAATTGCAATCTCTAATGAACTGCTTGACAATGGTGAAAACCTCAATTCTACACAGATAGCAAAGCTTCGTCAGGATAGGTCACAGCTGAATAAGCAAATTCAACTGCTTGAAAAATATATTCATTCTGGTAATCTTAATGAGGAAAGGAAAAAGTCACATTTTTCTGCATCCACGGCACCACCTACATCTTTCATGTATGAAACACCTCAGCAAACTGTCCTTTGTAATGGACCTACAAGAGATGGTACCCAGGCTTATATGGGTAGTGGGACATATGGGTCATCGTTCCAGTGTCTTCCATCCTTTTCTGTAGATAAGTATGGCATGTCATCAACTCCAGTGGAGAGAGAAGCCTTCATCCCAAAAATTATTGAAGTTAATTACATTGAAGGTTCTGGAGACAAACGCTGGAGCAGCCGTGATTTTCCTTGGACAAAAGAGTTAGAGGTTAATAATAAAAAAGTATTTGGAAATCACTCATTTCGCCCCAATCAAAGAGAGGTCATTAATGCCACAATGAGTGGATGTGATGTATTTGTTCTGATGCCCACTGGTGGTGGAAAGAGTCTGACCTATCAGTTACCAGCTCTTATTTGTCCCGGTATAACATTAGTAATTTCTCCCCTTGTATCCCTTATTCAAGATCAAATAATGCACCTATTGCAGGCAAATATACCTGCTGCTTACTTAAGTGCCAATATGGAATGGACTGAACAGCAGGAGATCCTCCGAGAACTTAATTCTGATTATTGTAAATACAAGTTATTATATGTGACACCTGAAAAGGTTGCCAAAAGTGATGTTCTTCTGCGACACTTGGATAATTTACATGTTCGTGAATTGCTTGCAAGGATTGTAATTGATGAGGCTCACTGTGTTAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGGCTTGGTATATTGAAACAGAAATTCCCAAATACTCCTGTTTTAGCTTTAACAGCTACAGCAACAGCTAGTGTAAAAGAAGATGTTGTGCAAGCACTTGGTCTTGTTAACTGCATCATTTTTCGGCAAAGTTTTAATCGGCCAAACTTATGGTATTCTGTTATCCCCAAGACCAAAAAGTGTTTGGAGGACATTGACAAATTCATTAGGGAGAATCATTTTGATGAATGTGGCATTATCTATTGTCTTTCACGAATGGACTGTGAAAAGGTTGCTGAAAAATTACAGGAATGTGGGCATAAAAGTGCATTTTATCATGGTAGCATGGATCCTGCTCAACGTGCCTCTGTTCAAAAGCAGTGGAGCAAAGATGAGATCAATATAATTTGTGCTACTGTGGCATTTGGGATGGGTATTAACAAACCTGATGTCCGCTTTGTAATCCATCATTCCCTCCCAAAATCTATTGAAGGCTATCATCAGGAATGTGGACGAGCTGGTAGAGATGGTCAACGTTCATCCTGTGTATTATATTATAGCTACAGTGATTATATACGAGTAAAGCTTATGTTAAGTCAAGGAGCAATAGAGCAAAGTCCCATGACATCTGGATACAACCGTTCAAATATGACAAATTCGGGAAGGATACTAGAAACAAACACTGAAAACCTTATGCGAATGGTCAGTTATTGTGAAAATGATGTTGATTGTAGGCGCCTTGTGCAGCTTGTTCATTTTGGGGAGAAGTTCAATTCTTCAACTTGTCAGAAAACATGTGATAATTGCTTGAAGATCACAAGTTTCATTGAGAAGGATGTCACAGAGATTGCAAAGCAATTGGTTGAACTTGTTAAGCTAATGGGACAGAGGGTCTCATCATCGCATGTATTAGAAGTGTATCGAGGTTCCTTAAGCCAGATGGTCAAGAAACACCGGCATGAGACTGTGAGCCTTCACGGTGCTGGAAAGCGTCTAGCTAAGGGTGAGGCTTCCCGCATATTGCATCATCTTGTTGTGGAGGATTTTCTTGTGGAGGAAGTAAAGAAAAGTGATTTTTATGGATCGGTATCATCAATATTGAAGGTAAATGAGCCTAAGGTCCGTAATCTGTTTGCTGGGCAGAGAATTATATTGAGATTCCCATCCTCCTCTGTAAAGGCATCAAAGCCAGGAAAATCTGATCCAACTCCAGCTAAGGGTTCTCTGACATCTGGGAAGCTGAATGTTACGCTAATTGGCACTCCTGCCCAGCCTCAAACTGAATTGGATTTGACAAATCTACTTCAGGATCTTTCAGCTAAGTTATACACTGCTCTGCGGATGTTGAGGACAAGTCTTGTTAGAGAAGCTGGAGAGGGTGTAATGGCTTACCATATATTTGGTAATGCTACGTTGCAGCAGATAAGCAAGAGAGTGCCGAGAACAAAAGAAGAACTCCTTGATATCAACGGCATCAGCAAGACTAAGGTAAGCAAATATGGGGATCGATTACTGGAAACCATTGAAAATACCATAAATGAGTATTACAATTTGGACAAAAGCAGCAGCAAAGGCAGTGCGGATTCTACCAAAAGGAGACGAGAGACAAATGGAGACCCAGATGCAAATGCTGAGGATGATTATGATTATGATTATGACTATGCTTTCACCAAAAGTACTGGTCGTTCAAAGAAAAGAACGGTAAAGAGACAAAATAGAAAAGCTGAGATATATAGTTCTGCAGAGGAAGATTATTTCCATGGATGTCCTGATGAAGACCTAGATTTTGACATCATAGAAATTGAGGCAATAGATCAAGTAACTTGTAGAAATGCTGCAGGAAGAGTACTACCTCAATGGACATCATCTTGA 3621 0.4049 MRVLYNLEERSFSATPTSLSYDYYNLSSQSLFLGEAKSTKGVKCDDKIPQVNWSHHVNAHENFSFQAKFLSSNFLFSVPPKKPCHEEQNPGIAGFVVRRSENIQGSQRVQVEKAWIALSSLQNSSRNYVQPGKTVEVTPLLREDRRTTSFQGGYENNERRCPDATTTPIVINHSSLGLDGLVNNHPKYTGQINETLKCMADDIGDDDILENIDVDQIVENYQSTCTPKPSISKFPPITPTADKDNFARQRDNVLPPELCLDCIHGYKLGLCPEAASHLQELKDNLIAISNELLDNGENLNSTQIAKLRQDRSQLNKQIQLLEKYIHSGNLNEERKKSHFSASTAPPTSFMYETPQQTVLCNGPTRDGTQAYMGSGTYGSSFQCLPSFSVDKYGMSSTPVEREAFIPKIIEVNYIEGSGDKRWSSRDFPWTKELEVNNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRHLDNLHVRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWYSVIPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKSAFYHGSMDPAQRASVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKLMLSQGAIEQSPMTSGYNRSNMTNSGRILETNTENLMRMVSYCENDVDCRRLVQLVHFGEKFNSSTCQKTCDNCLKITSFIEKDVTEIAKQLVELVKLMGQRVSSSHVLEVYRGSLSQMVKKHRHETVSLHGAGKRLAKGEASRILHHLVVEDFLVEEVKKSDFYGSVSSILKVNEPKVRNLFAGQRIILRFPSSSVKASKPGKSDPTPAKGSLTSGKLNVTLIGTPAQPQTELDLTNLLQDLSAKLYTALRMLRTSLVREAGEGVMAYHIFGNATLQQISKRVPRTKEELLDINGISKTKVSKYGDRLLETIENTINEYYNLDKSSSKGSADSTKRRRETNGDPDANAEDDYDYDYDYAFTKSTGRSKKRTVKRQNRKAEIYSSAEEDYFHGCPDEDLDFDIIEIEAIDQVTCRNAAGRVLPQWTSS 1206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4628g00002 1206 Pfam RecQ zinc-binding 772 853 IPR032284 -
Mupr4628g00002 1206 SUPERFAMILY HRDC-like 1016 1095 IPR010997 GO:0000166|GO:0044237
Mupr4628g00002 1206 Gene3D - 860 969 IPR036388 -
Mupr4628g00002 1206 ProSiteProfiles HRDC domain profile. 1019 1101 IPR002121 GO:0003676
Mupr4628g00002 1206 SMART helicmild6 679 760 IPR001650 -
Mupr4628g00002 1206 Gene3D HRDC domain 1018 1106 IPR044876 -
Mupr4628g00002 1206 Coils Coil 304 324 - -
Mupr4628g00002 1206 Gene3D - 410 636 IPR027417 -
Mupr4628g00002 1206 FunFam Bloom syndrome, RecQ helicase 637 857 - -
Mupr4628g00002 1206 Pfam Helicase conserved C-terminal domain 653 759 IPR001650 -
Mupr4628g00002 1206 PANTHER DNA HELICASE RECQ FAMILY MEMBER 416 1108 - -
Mupr4628g00002 1206 Pfam DEAD/DEAH box helicase 448 616 IPR011545 GO:0003676|GO:0005524
Mupr4628g00002 1206 MobiDBLite consensus disorder prediction 1102 1128 - -
Mupr4628g00002 1206 NCBIfam RecQ family ATP-dependent DNA helicase 438 913 IPR004589 GO:0004386|GO:0006310
Mupr4628g00002 1206 CDD SF2_C_RecQ 637 769 - -
Mupr4628g00002 1206 SMART ultradead3 442 645 IPR014001 -
Mupr4628g00002 1206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 417 778 IPR027417 -
Mupr4628g00002 1206 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 454 629 IPR014001 -
Mupr4628g00002 1206 Pfam HRDC domain 1023 1091 IPR002121 GO:0003676
Mupr4628g00002 1206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 635 903 IPR027417 -
Mupr4628g00002 1206 SMART RQC_2 862 972 IPR018982 GO:0006260|GO:0006281|GO:0043138
Mupr4628g00002 1206 MobiDBLite consensus disorder prediction 1108 1124 - -
Mupr4628g00002 1206 SMART hrdc7 1019 1101 IPR002121 GO:0003676
Mupr4628g00002 1206 FunFam ATP-dependent DNA helicase RecQ 419 636 - -
Mupr4628g00002 1206 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 654 815 IPR001650 -
Mupr4628g00002 1206 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 568 577 IPR002464 -
Mupr4628g00002 1206 Gene3D - 637 856 IPR027417 -
Mupr4628g00002 1206 CDD DEXHc_RecQ 437 636 - -
Mupr4628g00002 1206 Pfam RQC domain 859 974 IPR018982 GO:0006260|GO:0006281|GO:0043138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4628g00002 Mupr-Chr4628 15323 23237 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4628g00002 668 791 Eukaryotic Initiation Factors Gene Family AT3G19760 24.409 2.19e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4628g00002 K10901 - gmx:100800006 1933.69