Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4612g00004 ATGATACAAGTTGAGAATCCAACCCATAAGCTGATGACGCGTGAGGAATGGGTAACCCCCTTTGCTTGCACCCACACACTCAGTCCACACCGCACCACACCGCACCGTAGAAAACTTCTTTTCCTCTCTCTATCTCTTTCCCACCCGCTAGGGTTTTCTCCTATCGCATCTCGATTTCGCAACCTCATCGCGCGATTCTTCATGGAGGGTACTGGCATGGATGAGAATAAGAGTATCAATGATAATAATAAGTCTGAGGCGCATTTGACTTCTGCCGCTGCTTTTGTGGAGGGTGGAATACAGGACGCTTGTGATGATGCTTGCAGCATATGCCTTGAAGCCTTCTGTGACAGTGATCCTTCCACGGTCACTAGTTGCAAGCATGAGTTTCATCTTCAGTGCATTCTGGAATGGTGTCAGAGAAGCTCCCAGTGCCCCATGTGTTGGCAATCTATCAGTCTCAAAGATCCAACAAGCCAAGAATTGCTAGAGGCAGTGGAAAGAGAGAGAAACTTTAGGTTCAATCCATCTAGAAATGCGGCAATATTTCATCATCCAACACTCGGGGATTTTGAGCTACAACATTTGCCAGTTGGAGCTAGTGATGCTGATCTTGAAGAGCGTATAATCCAACACTTAGCTGCTGCAGCAGCAATGGGAAGAGCACGCCACATTGCTAGAAGGGAAGGCCAGAGAAACAGGTCATCAGCTCAAGGTCGCCCACATTTTTTGGTTTTTTCTACTCATCCTAATTCACCTCCCATGGCTCCTGCTTCTTCCTCTCCATCTCAGAGGGGGGAAGATGAACCAACTCCTACGATTGCTGTTGCCAATCTGTCTCCAACTCCTGCAACGGGAGAAGAATCATCACAGCTGACTTTAGTTCCTCCTGTTCAAGCAAACCAGGTTTCTGCTTCAGGATCTGGATCTACTGCTCTCACTACTGATCATCAGGGATCATCTTACAACAACAGGAGATCTCCTAATCAGTCATCTCCAAGTAGTCAAGACAGAGCAGGGCCATCAGAACTCCAGTCATTTTCAGACTCTCTGAAATCTAAACTGAATGCTGTGTCAACAAGATACAAGGAGTCAATTTCCAAGAGCACAAGAGGGTGGAAGGAGAGATGGTTTTCTCGTAACACCTCCATGTCTGATCTTGGATCTGAAGTTAGGCGAGAAGTTCATGCAGGGATTGCAACTGTGTCACGCATGATGGAACGCCTGGAGACCAGAGACAGTAATAGAAGCAATAGCAATTCAGCTCCGAGTAATTTAGAGGATGTTTCAGTTCAGGGATCTAATGACCAGCCTTTAACAGGCGCTGAAGGGGACTCTCTATTGAGAGACAATAACACAAAAGCTTCTTGTGCTGCAGGTTCTAGTTCGAATTAA 1395 0.4652 MIQVENPTHKLMTREEWVTPFACTHTLSPHRTTPHRRKLLFLSLSLSHPLGFSPIASRFRNLIARFFMEGTGMDENKSINDNNKSEAHLTSAAAFVEGGIQDACDDACSICLEAFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQSISLKDPTSQELLEAVERERNFRFNPSRNAAIFHHPTLGDFELQHLPVGASDADLEERIIQHLAAAAAMGRARHIARREGQRNRSSAQGRPHFLVFSTHPNSPPMAPASSSPSQRGEDEPTPTIAVANLSPTPATGEESSQLTLVPPVQANQVSASGSGSTALTTDHQGSSYNNRRSPNQSSPSSQDRAGPSELQSFSDSLKSKLNAVSTRYKESISKSTRGWKERWFSRNTSMSDLGSEVRREVHAGIATVSRMMERLETRDSNRSNSNSAPSNLEDVSVQGSNDQPLTGAEGDSLLRDNNTKASCAAGSSSN 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4612g00004 464 MobiDBLite consensus disorder prediction 275 351 - -
Mupr4612g00004 464 SMART ring_2 108 148 IPR001841 -
Mupr4612g00004 464 CDD RING-H2_RHF2A 95 157 - -
Mupr4612g00004 464 Pfam Ring finger domain 107 148 IPR001841 -
Mupr4612g00004 464 FunFam E3 ubiquitin-protein ligase RHF2A 79 182 - -
Mupr4612g00004 464 MobiDBLite consensus disorder prediction 224 351 - -
Mupr4612g00004 464 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 157 IPR013083 -
Mupr4612g00004 464 MobiDBLite consensus disorder prediction 252 268 - -
Mupr4612g00004 464 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 81 157 - -
Mupr4612g00004 464 MobiDBLite consensus disorder prediction 406 464 - -
Mupr4612g00004 464 SUPERFAMILY RING/U-box 101 156 - -
Mupr4612g00004 464 ProSiteProfiles Zinc finger RING-type profile. 108 148 IPR001841 -
Mupr4612g00004 464 MobiDBLite consensus disorder prediction 415 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4612g00004 Mupr-Chr4612 33727 38119 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4612g00004 105 156 C3H Transcription Factor Family AT4G00335 44.231 6.11e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4612g00004 K19043 - gmx:100814908 685.256