Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4606g00001 ATGTCTGCAGCTTTGGATATGACGCTCGACGACATCATCAAGAACAACAAAAAATCTCGATCCGGAAATTCTCGTGGCCGGACTCGACCCTCCGGACCCGGACCTTCTCGCCGGTTGCCCAACCGTGCCGCCAATCGCGCCGCACCTTATGCCACCGCTAAGGCGCCGGAGTCGACGTGGCAGCACGATTTGTTTGCAGATCAGCATGTGGCTGTGGCGGGGTTCGCGGCTCAAGGTGGTCGCGCGTCTTCCATAGAAACTGGGACCAAGCTTTACATTTCCAATTTGGATTATGGTGTTTCCAACGATGATATTAAGGAATTGTTTGCTGAAGTTGGTGACGTGAAACGGCTTGTGGTTCATTATGATAGGAGTGGCAGATCGAAGGGCACGGCAGAAGTAGTATTTTCACGACGATCTGATGCTGTAGCTGCTGTAAAGAAATACAACAATGTTCAATTAGATGGGAAACCAATGAAGATAGAGATTGTGGGAACAAACATTTCTACACCTGGTGTAGCTCCTGCTCCAAACAGAGCTATTGGAAATTTGAATGGAGTTCCTCGAAGTGGACAAGGAAGAGGTGGGGCATTAAGAAGGTCAGGTGGAAGAGGGCAAGGCATTCGAAGGGATCGAGGACGGGGAAGAGGTCGTGGTGGGGGAGGTCGTGGCGAGAAGTTATCTGCAGATGATCTTGATGCTGATTTGGATAATCCGTCGTCATGCTCGTTCAAGTCCTCGTCTGTGTTGCAAAATTTACACCCGCGGCGACCCTGCTTTCCTTATTCTGAATATTTGAGAAATGTCATTGCGGGTCGAAACAGGCAAGTATAA 834 0.4964 MSAALDMTLDDIIKNNKKSRSGNSRGRTRPSGPGPSRRLPNRAANRAAPYATAKAPESTWQHDLFADQHVAVAGFAAQGGRASSIETGTKLYISNLDYGVSNDDIKELFAEVGDVKRLVVHYDRSGRSKGTAEVVFSRRSDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPGVAPAPNRAIGNLNGVPRSGQGRGGALRRSGGRGQGIRRDRGRGRGRGGGGRGEKLSADDLDADLDNPSSCSFKSSSVLQNLHPRRPCFPYSEYLRNVIAGRNRQV 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4606g00001 277 Gene3D - 76 228 IPR012677 -
Mupr4606g00001 277 FunFam THO complex subunit 4 82 229 - -
Mupr4606g00001 277 MobiDBLite consensus disorder prediction 10 53 - -
Mupr4606g00001 277 SUPERFAMILY RNA-binding domain, RBD 84 195 IPR035979 GO:0003676
Mupr4606g00001 277 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 238 - -
Mupr4606g00001 277 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 159 IPR000504 GO:0003723
Mupr4606g00001 277 CDD RRM_THOC4 89 163 - -
Mupr4606g00001 277 SMART rrm1_1 90 162 IPR000504 GO:0003723
Mupr4606g00001 277 MobiDBLite consensus disorder prediction 204 232 - -
Mupr4606g00001 277 MobiDBLite consensus disorder prediction 172 232 - -
Mupr4606g00001 277 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 166 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4606g00001 Mupr-Chr4606 439 5352 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4606g00001 88 163 Eukaryotic Initiation Factors Gene Family AT2G23350 38.158 5.46e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4606g00001 K12881 - gmx:100775827 309.301