Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr458g00001 ATGAAACGTGCAAACGACGACGTGGTTGCCCCAACCTCGAAGCCAGTGTTCCTAACCAAAGCCCAACGCGAGCAATTGGCCCTTCAACGCCGCCAGGAAGAAGTCGCGGAGCAGAAGCGGCGCCAGGAGCAGCTCCTTTCCCGCAACCGCCCCTCGGATCCGAAACCCTCCTCGGACAGGGAAAGGGACAGAGACAGAGATAGGGATAGGGACAGAGACAGAGATAGAGATAGGGATAGGGACAGGGACAGGGACAGAGACAGGGACCGAGAGCGCGAGAGGGCGCGCGATCGGGACCGCGAAGCGGAGCGGCGGAACCGAGAGAGGGAGCGCGAGGAGGAGAGCAGGGCCCGGGAGCGCGCTAGGGTGGAGAAGCTGGCGGAGCGCGAGCGCGAGAAAGAGCTGGAGTCCATCAAGGAGCAGTACCTAGGCTCCAAGAAGCCCAAGAAACGCGTCATCAAGCCCAGCGAGAAGTTCCGCTTCTCCTTCGACTGGGAGAACACTGAGGACACCTCCCGCGACATGAACGCCCTCTACCAGAACCCCCACGAGGCCCAGCTCCTCTTCGGCCGCGGCTTCCGTGCTGGCATGGATCGCCGCGAGCAGAAGAAACTCGCCGCTAAAAACGAGAAGGAGATGCGCGAGCAAATCCGCAAGAAAGACGGCCTCGAGGAGAAGCCCGAGGAGGCCGACGCCCAGCGCCGCAAGGAGGCCGCCGCTGACCTCTACGACACCTTCGACATGCGCGTGGACCGCCACTGGAGCGAGAAGAAGCTGGACGAGATGACGGAACGGGATTGGCGCATTTTCAGAGAAGACTACAACATCTCCTACAAGGGTTCGAAGATTCCTCGTCCTATGCGGAGCTGGACCGAGAGTAAATTGAGCCACGAGCTTTTGAAGGCGGTTGAGAAGGCTGGTTACAAAACCCCTTCTCCTATTCAGATGGCTGCTATTCCCCTTGGTTTGCAGCAGCGCGATGTCATTGGCATTGCCGAGACTGGTTCGGGGAAAACCGCTGCCTTTGTTCTTCCCATGTTGAGCTACATTACCAGGCTTCCTCCCATGAGTGAGGACAACGAGGCTGAGGGTCCCTATGCTGTTGTCATGGCCCCCACTCGCGAGCTCGCTCAGCAGATTGAGGATGAGACTGTTAAGTTTGCTCAGTATCTGGGCATCAAGGTGGTTTCCATTGTTGGTGGCCAGTCCATTGAGGAGCAAGGGTTTAAGATTAGGCAAGGCTGTGAGATTGTCATTGCCACTCCCGGCCGTTTGATTGATTGCTTGGAGCGCCGATATGCTGTTCTCAACCAGTGCAATTATGTTGTTCTTGATGAGGCTGATCGCATGATTGACATGGGGTTTGAGCCCCAGGTGATGGGTGTCCTTGATGCCATGCCTTCCAGCAATCTCAAACCAGAGAACGAGGATGAGGAGCTTGACGAGAAGAAGATTTACAGGACCACCTATATGTTCAGCGCCACCATGCCGCCTGCTGTTGAGAGGCTTGCTAGGAAATATTTGAGGAATCCTGTTGTGGTGACCATTGGCACTGCTGGAAAGGCAACTGATCTGATTAGCCAGCATGTTAACATGATGAAGGAATCTGAGAAATTTTACAAGCTTCAGAGGTTGCTTGATGAGCTTAACGACAAGACCGCCATTGTGTTCGTTAACACCAAGAAGAATGCAGATATGGTTGCCAAGAATTTAGATAAGGAAGGGTATCGCGTGACTACTTTGCATGGAGGGAAGTCGCAGGAGCAGAGGGAGATTAGTCTTGAAGGGTTTAGGACAAAGAGATATAATGTTCTTGTTGCTACTGATGTTGCTGGACGTGGTATTGACATACCCGATGTGGCTCATGTCATCAACTATGATATGCCTGGGAATATTGAAATGTACACTCATCGTATTGGGCGTACTGGTCGTGCAGGAAAGACGGGTGTGGCTACAACATTCCTGACTCTTCAGGACTCAGATGTCTTTTATGACCTCAAGCAGATGCTTATTCAAAGTAATAGTCCTGTTCCACCTGAACTGGCAAGGCACGAAGCTTCAAAATTCAAGCCAGGATCTATTCCCGACAGACCACCTAGACGAAATGACACTGGATCTTCATTTTTCTCTTTTGATGAGGAGGACCGAAAACGAATATTTGATTTGATTTTCAATGGCCTTTTAAGGCCATCGACCACCTGCAAACTAGTGACAAAGTTTCACCGCCATATCCCTTGGTTGGATGCCTCGAAGCAAGCCTCAAACTCTGCAGCCATGGTTGAAGGGGTTAGAAGAGTCTGTTTAATAGACTTTCAAGAGATAGCTCCTCCAACCAGCATTATAGATGTATCTAGACCTAGAGCGTTTGTTATTTTGACATCCAGCAAAATTATGGGGTTCAAGAATTTCATTCGACACAAGTCTTTGAATTCTCTGTTTAGAGATATGACCCAAACGCTCGTGTCATAA 2469 0.518 MKRANDDVVAPTSKPVFLTKAQREQLALQRRQEEVAEQKRRQEQLLSRNRPSDPKPSSDRERDRDRDRDRDRDRDRDRDRDRDRDRDRDRERERARDRDREAERRNREREREEESRARERARVEKLAEREREKELESIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNALYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRKKDGLEEKPEEADAQRRKEAAADLYDTFDMRVDRHWSEKKLDEMTERDWRIFREDYNISYKGSKIPRPMRSWTESKLSHELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPMSEDNEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVNMMKESEKFYKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDSDVFYDLKQMLIQSNSPVPPELARHEASKFKPGSIPDRPPRRNDTGSSFFSFDEEDRKRIFDLIFNGLLRPSTTCKLVTKFHRHIPWLDASKQASNSAAMVEGVRRVCLIDFQEIAPPTSIIDVSRPRAFVILTSSKIMGFKNFIRHKSLNSLFRDMTQTLVS 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr458g00001 822 MobiDBLite consensus disorder prediction 1 20 - -
Mupr458g00001 822 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 667 IPR027417 -
Mupr458g00001 822 Pfam Helicase conserved C-terminal domain 540 646 IPR001650 -
Mupr458g00001 822 SMART ultradead3 307 529 IPR014001 -
Mupr458g00001 822 Pfam DEAD/DEAH box helicase 313 503 IPR011545 GO:0003676|GO:0005524
Mupr458g00001 822 FunFam probable ATP-dependent RNA helicase DDX23 519 705 - -
Mupr458g00001 822 FunFam probable ATP-dependent RNA helicase DDX23 249 518 - -
Mupr458g00001 822 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 288 316 IPR014014 GO:0003724
Mupr458g00001 822 Coils Coil 18 48 - -
Mupr458g00001 822 Coils Coil 92 136 - -
Mupr458g00001 822 Gene3D - 249 518 IPR027417 -
Mupr458g00001 822 Coils Coil 200 226 - -
Mupr458g00001 822 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 319 514 IPR014001 -
Mupr458g00001 822 MobiDBLite consensus disorder prediction 27 147 - -
Mupr458g00001 822 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 541 685 IPR001650 -
Mupr458g00001 822 MobiDBLite consensus disorder prediction 683 697 - -
Mupr458g00001 822 SMART helicmild6 565 646 IPR001650 -
Mupr458g00001 822 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 224 685 - -
Mupr458g00001 822 CDD SF2_C_DEAD 526 655 - -
Mupr458g00001 822 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 443 451 IPR000629 -
Mupr458g00001 822 Gene3D - 519 703 IPR027417 -
Mupr458g00001 822 CDD DEADc_DDX23 299 515 - -
Mupr458g00001 822 MobiDBLite consensus disorder prediction 675 708 - -
Mupr458g00001 822 MobiDBLite consensus disorder prediction 201 236 - -
Mupr458g00001 822 MobiDBLite consensus disorder prediction 27 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr458g00001 Mupr-Chr458 2778 10126 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr458g00001 289 682 Eukaryotic Initiation Factors Gene Family AT1G72730 33.418 2.58e-62 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr458g00001 K12858 - gmx:100799264 1120.15