Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4585g00001 ATGATGCTCGGAGAGCGCCATCGCGCGAATCCAACGGTCCACGTACCTCCGTGGTCAGCCCACGACGATCCAACGGCGGAGATGTACTCTGCGTTCTTATCAAACGACGTCAATGCTGCGGAGTACTCTCCGTACTATCTTCAAGAAGCACTAACGGCGCTGCAGCGTTACCTTCCGTCAAATGAAACAGACCCCGACTCAGACTCAGAGGTTACGCTGGATGCGCCGGTTGACGCGTACTCGTGCGACCATTTCCGTATGTTCGAGTTTAAGGTCCGGCGGTGCGCGCGTGGGAGGTCTCACGACTGGACAGAGTGTCCGTACGCGCACCCCGGCGAGAAGGCTCGCCGGCGGGACCCGCGGAAGTTCCACTACTCCGGCACGGCGTGCCCGGAGTTCCGCAAGGGGAACTGCAAAAAGGGCGACACGTGCGAGTTTGCACACGGTGTGTTCGAGTGCTGGCTCCACCCGGCGCGCTACCGGACTCAGCCGTGCAAGGATGGCACCAGTTGCCGGCGGCGCGTCTGCTTCTTCGCGCACACGCCAGAGCAGCTGCGCCTTGTGCCGGTGCAGAGTCCTCGGAGCGTGAACTCTGCGGAGTCCTATGACGGTTCCCCGATGAGGCAGGTTTCCATGCAGCAGTTCGTGTCGTCGTCTCCGGCGTCCGTTTCTCCGCCGGAATCGCCGCCCGTGTCGCCGTCCATCAACGAGATGGTAGCAAATTTACGTAATTTGCAGCTGGGGAAGGTGAAATCGATGCCTCCTAATAGAAACGTTACAGCTGGGTCTCCCGGGTTTGGATCACCATGTTTCGGGTCTCCACGAGGCTCCGTGCTCCGACCCGGGTTTTGTAGCCTTCCAAGTACTCCAACTCAGCAACCGGTTCGGTCTGGAGTTAACTATTTCGATCTTTGGGATAATAGTTGTTGTGAGGAGGAACCGGTTATGGAGAGGGTGGAGTCCGGGAGGGGCATAAGGGCTAAGATGTTTGAAAAGCTGAGCAAGGAAAATTCTCTGGACGGGTCGGGTTTGGCTCAAACAAGTGGGGCTCCGGATGTTGGCTGGGTTTCTGAGCTGGCCATGGGAAGGGCTCCATGCTGTGACAAATCTAACGTGAAAAGAGGGCCATGGTCTCCTGATGAAGATGCCACCCTCAAAAACTACCTTGAGAAACATGGCACCGGTGGTAATTGGATAGCTCTCCCCAAAAAAGCAGGCCTTAAGCGTTGCGGGAAGAGTTGTCGTCTAAGATGGCTGAACTATCTGAGGCCTCATATTAAGCTTGGAGCTCAACTGCCCGGGAGAACAGACAATGATGTGAAAAATCACTGGAACACCAAGCTAAAGAAAAAGTTCTTGTCAGAAAACACAAGTGTTGCCCCAAGCAACAATGGCACTATCAGCAATACTAGTTATTCTGACCCGTTCTCAGCTTTTACTCTTCAACCCAGTGTTGAGGCCTTTGTCTTGGATCAAAAGCTGAACTCAGTTTGGTTTGACTCCAACAATGTTTTGGACTTGGAGCAAAAACCAATTCCACTTCCTTTTCCAATGCCTCAGGAATTAGAAGCCTTTAATACTGGGAGCAGTTGTAGTGCACCACTCCCTAAGGAAGCTTCAATGCTTTCCAATGCAGCTTGCTTAGCACAGTTTGGTTATGACTATGCAGGTGAAGAAGATCCAAATTTGCTTGAATTTGTGCTTGACGATCTTCTGAATCATGGATTTGCTTCTCAAGACAAAAGTAGTGAAGTTGCTCCATCATATCTGGCTAACCAAGACTTTTTCTACTCATCAAAAACATGA 1806 0.5255 MMLGERHRANPTVHVPPWSAHDDPTAEMYSAFLSNDVNAAEYSPYYLQEALTALQRYLPSNETDPDSDSEVTLDAPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRKGNCKKGDTCEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRLVPVQSPRSVNSAESYDGSPMRQVSMQQFVSSSPASVSPPESPPVSPSINEMVANLRNLQLGKVKSMPPNRNVTAGSPGFGSPCFGSPRGSVLRPGFCSLPSTPTQQPVRSGVNYFDLWDNSCCEEEPVMERVESGRGIRAKMFEKLSKENSLDGSGLAQTSGAPDVGWVSELAMGRAPCCDKSNVKRGPWSPDEDATLKNYLEKHGTGGNWIALPKKAGLKRCGKSCRLRWLNYLRPHIKLGAQLPGRTDNDVKNHWNTKLKKKFLSENTSVAPSNNGTISNTSYSDPFSAFTLQPSVEAFVLDQKLNSVWFDSNNVLDLEQKPIPLPFPMPQELEAFNTGSSCSAPLPKEASMLSNAACLAQFGYDYAGEEDPNLLEFVLDDLLNHGFASQDKSSEVAPSYLANQDFFYSSKT 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4585g00001 601 Gene3D - 125 187 - -
Mupr4585g00001 601 SMART sant 373 424 IPR001005 -
Mupr4585g00001 601 Pfam Myb-like DNA-binding domain 374 422 IPR001005 -
Mupr4585g00001 601 Gene3D - 366 427 - -
Mupr4585g00001 601 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 430 452 IPR017930 -
Mupr4585g00001 601 Gene3D - 428 470 - -
Mupr4585g00001 601 FunFam Transcription factor RAX3 367 428 - -
Mupr4585g00001 601 FunFam Zinc finger CCCH domain-containing protein 66 82 150 - -
Mupr4585g00001 601 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 369 426 IPR017930 -
Mupr4585g00001 601 PANTHER UNKEMPT FAMILY MEMBER 48 360 IPR045234 -
Mupr4585g00001 601 ProSiteProfiles Myb-like domain profile. 369 422 IPR001005 -
Mupr4585g00001 601 SMART c3hfinal6 159 182 IPR000571 GO:0046872
Mupr4585g00001 601 SMART c3hfinal6 124 150 IPR000571 GO:0046872
Mupr4585g00001 601 SUPERFAMILY Homeodomain-like 374 449 IPR009057 -
Mupr4585g00001 601 CDD SANT 376 448 IPR001005 -
Mupr4585g00001 601 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 129 149 IPR000571 GO:0046872
Mupr4585g00001 601 ProSiteProfiles Zinc finger C3H1-type profile. 125 151 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4585g00001 Mupr-Chr4585 7347 17255 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4585g00001 74 236 C2H2 Transcription Factor Family AT5G12850 56.213 1.27e-57 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mupr4585g00001 Myb_DNA-binding 5.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4585g00001 - - gmx:100778184 623.239