Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4529g00002 ATGGACTTCGATGAGTACGAATATCTGGAAAAGACAGTGGAGGAAGACATAGACTCCTCTAAGAAGAAGAAGGAGATTACCGACAAGAGCGAGAGGAGTTACCGGAAGCGCGACGTCGACGAGGATCTCGACGCCGATGACAGAAGGAGCAAGAGGTCAAGGGGCGACGACGAGAACGGCGGTTCCAAGAAAGATCGCGACAGAGAGCGCGACCGCGACAGAGACCGTTCCTCCGGCCGTCACAGGAGCGACAGGGAGAGAGACGGAGAGAGGAAAGAGAGGGATAAGGATAGAGAGAGGAGGGATAAGGATAAGGATAAGGATAAGGATAAGGATAGGGATAGGAGAGACCGGGATAGGGGAGACCGGGATAGGGATAAGGAGCGCGAGAGAAGAGAGAGGGATAGGGAGCGAGGAGAGAGAGAACGAGAGGACAGAGAGAGATCCAGAAGGAGCAGGAGTCGCTCTGAGAGAGACAGAGACAGGGAGCGAGATTTCGAAATGCGAGATGGCCGGAGATTTAGGGATAAGAAAGAGGCTGTGGAACCTGAGGCGGACCCCGAAAGGGATCAGAGAACTGTTTTTGCCTACCAGATGCCGTTAAAAGCAGCAGAGAGAGATGTGTATGAGTTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTCCGTCTGATCATGGATAGGAATTCAAGACGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGTGATGTCAGTACCAATGGCTATTGCTCTCTCTGGCCAACTTCTTCTTGGGCAACCTGTAATGGTGAAACCTTCTGAGGCTGAAAAGAACCTTGTGCAGTCTAATGCTTCTGGTGGAGCGGCTGGTGTAGTTGGGCCCTATGGAGCTGTGGACAGAAAATTGTATGTGGGGAATCTCCACTTCAACATGACTGAGAGTCAACTGCGGGAGATTTTTGAGCCATTTGGTCCAGTTGAGGTTGTCCAATTGCCTCTTGACTTGGAAACAGGACACTGCAAGGGTTTTGGGTTTGTTCAATTTACCCATCTTGAACATGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTGGAGATTGCTGGCAGGACTATTAAGGTTTCATGTGTAACAGATCATGTTGGAAGCCAAGATACAATTGCAAAATCTGCAGACTTGGATGATGACGAAGGTGGATTGACCTTAAATGCTCACTCAAGAGCATTGCTTATGCAGAGGCTGGCTGGCACTGACATTCCTGCAAGCATAGGTATGCCTGTTGTGAATGGCTCAGTTCCTGCTCAGCAGGTGCCTATTGGTGCATCAGTTCTACCTACACAAGTTATGCCTACTCCAGTGGTAGAACCTGTAGGAATCCCCAGCGAGTGTTTACTTTTGAAGAATATGTTTGATCCAAGCACCGAGACGGAACCAGATTTTGATATAGACATTAAAGAGGATGTAGAGGAAGAGTGTTCTAAATATGGCCGGGTGAAGCATATTTTTGTTGACAAAAAAAGTGCAGGTTTTGTGTACTTGCGGTTTGAAACAGTGGAAGCAGCAAGTGCTGCTCAACGTGCAATGCACATGAGATGGTTTGCACGCAGCAACCACAGTTATATGAAGCCAAGTTTAAAGGGGAGGATTGAGGAAGTTCATACATGCCTCGAGGCTCCTGAAGATACAATATTGGCATAA 1677 0.4782 MDFDEYEYLEKTVEEDIDSSKKKKEITDKSERSYRKRDVDEDLDADDRRSKRSRGDDENGGSKKDRDRERDRDRDRSSGRHRSDRERDGERKERDKDRERRDKDKDKDKDKDRDRRDRDRGDRDRDKERERRERDRERGEREREDRERSRRSRSRSERDRDRERDFEMRDGRRFRDKKEAVEPEADPERDQRTVFAYQMPLKAAERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASGGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFVQFTHLEHAKAAQSLNGKLEIAGRTIKVSCVTDHVGSQDTIAKSADLDDDEGGLTLNAHSRALLMQRLAGTDIPASIGMPVVNGSVPAQQVPIGASVLPTQVMPTPVVEPVGIPSECLLLKNMFDPSTETEPDFDIDIKEDVEEECSKYGRVKHIFVDKKSAGFVYLRFETVEAASAAQRAMHMRWFARSNHSYMKPSLKGRIEEVHTCLEAPEDTILA 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4529g00002 558 FunFam Splicing factor CC1-like 117 277 - -
Mupr4529g00002 558 FunFam Splicing factor CC1-like 278 383 - -
Mupr4529g00002 558 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 387 473 IPR029123 -
Mupr4529g00002 558 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 261 IPR000504 GO:0003723
Mupr4529g00002 558 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 366 IPR000504 GO:0003723
Mupr4529g00002 558 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 478 526 IPR000504 GO:0003723
Mupr4529g00002 558 NCBIfam splicing factor, CC1-like family 74 528 IPR006509 GO:0003723|GO:0005634|GO:0006397
Mupr4529g00002 558 CDD RRM1_RBM39_like 193 265 - -
Mupr4529g00002 558 SUPERFAMILY RNA-binding domain, RBD 293 371 IPR035979 GO:0003676
Mupr4529g00002 558 SMART rrm1_1 193 265 IPR000504 GO:0003723
Mupr4529g00002 558 SMART rrm1_1 295 368 IPR000504 GO:0003723
Mupr4529g00002 558 SMART rrm1_1 456 535 IPR000504 GO:0003723
Mupr4529g00002 558 MobiDBLite consensus disorder prediction 13 164 - -
Mupr4529g00002 558 Coils Coil 127 147 - -
Mupr4529g00002 558 MobiDBLite consensus disorder prediction 1 164 - -
Mupr4529g00002 558 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 529 IPR006509 GO:0003723|GO:0005634|GO:0006397
Mupr4529g00002 558 SUPERFAMILY RNA-binding domain, RBD 116 267 IPR035979 GO:0003676
Mupr4529g00002 558 CDD RRM3_RBM39_like 454 527 - -
Mupr4529g00002 558 Gene3D - 290 384 IPR012677 -
Mupr4529g00002 558 SUPERFAMILY RNA-binding domain, RBD 450 527 IPR035979 GO:0003676
Mupr4529g00002 558 Gene3D - 450 533 IPR012677 -
Mupr4529g00002 558 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 269 IPR000504 GO:0003723
Mupr4529g00002 558 Gene3D - 120 278 IPR012677 -
Mupr4529g00002 558 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 372 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4529g00002 Mupr-Chr4529 21641 29328 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4529g00002 279 367 Eukaryotic Initiation Factors Gene Family AT4G34110 40.000 9.95e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4529g00002 K13091 - gmx:100793461 669.077