Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4477g00001 ATGGAGTCCTCTGTTGATGTATTATCAGCTAAATGTCGTCGTCCAATTGGATTTAACCTGGAAGGTAAAGGATTTTCCCCTGACCCTGACAGAGACAAAAGACTGAAGTTATCAAATGTTGTTGAGTACGGGAATCCATACACAATTACTGATGTTCTGGACCGTATAGAGCATGGGAAATTTGGAAGTGTCACGAAGGACATAGAGGCCCTTGTAGCTCGAAAAATGCAGATACTGGGACCTTACTTTGCAAAGTATCCCATACTAGTTAATCAATTGTGGGAAGTGGTAAGTGACCACAATGAAGAAACTCCCAAGTTCGAAGATCAACAAGTTACTGGTTTGACAGATCGAAATGTCATCCAATTGGAGGGGGGGAACACTGATCAACAAGTTACTGGTTTGACAGATCAAAATGTCATAGAATTGGAGGGGGAAAACATTGTTCAACAAGTTACTGGTTTGACACATCAAAATGTCATAGATTTGGTGGGGGAAAACACTGTAAAGGTTGTTCATGCAGCACCAAATCCTGTTGTGATTATTGATTCAGATGAGGAAGATGACAGAGATAAAAAATCTATTGTTCCATTTCATGAAGTTGTGTTGCCGAGACTAGTTGCACCGCCTCCTGCGTTGAAGATGATTGAGTACCACACTCCCGCTCCTTACCAAGGAGATAGCAAAAGTCTAAAAGTTGAGACAAGTACGGCTGGTAAAGGTAACTCTAGGGGAGATAAAGGTGTTTATATTGGTGTACAGGAGGAAAATGCTCATCAGGTTGATACTGAAGATGATGGTCTAGAAGATATTTGGAAGGAGATGTCGATGGCAATAGAATGTTCCAAAGATGTTTCCGTGAATCCTCTGCCGGATGAAGAAGTGAAAGAAGATGAGGACTGTGATCATTCTTTTGTTTTAAAAGATGATCTTGGTTATGTTTGTCGCGTTTGTGGCGTTATTGACCGAGGAATTGAAACCATATTTGAGTTCCAGTACAAGGTTAAACGGAGCACAAGAACTTATGCATCTGATTCACGGAATACCAAAGGAAAAGCAGATTTATTTGGAATTAATGTTGCTGAAGATGATCTCGTGGTAACTGAAATCTCAGCGCATCCTAGACACATGAATCAGATGAAACCCCATCAAGTTGAAGGATTCAATTTTCTTGTTAGAAATCTTGCGGGTAACCATCCTGGGGGCTGCATCTTGGCCCATGCTCCAGGATCTGGGAAAACATTCATGATAATCAGTTTCATGCAAAGTTTTCTAGGCAAGTATCCTAATGCAAGACCCTTAGTGGTGCTTCCTAAGGGAATATTGTCAACATGGAAAAAGGAGTTTCGAACATGGCAAGTGGAGGACGTACCTCTGTATGACTTTTACACAGTGAAGGCAGATAGTAGAAGCCAACAACTAGAAGTGTTGAAGCAATGGGTGGACCATAAGAGTATCCTTTTCTTAGGATACAAACAGTTCTCCTCTATTGTCTGTGATAATGGGACCAACAGTACATCTTCATCTTGCCAAGAGATTTTACTCAAGGTTCCTTCAATTCTTATTTTAGATGAGGGACACAATCCAAGGAATGAAAACACAGATATGGTACAGTCCCTTGCAAAAGTTCAAACACCTAGAAAAGTTGTACTGTCAGGAACGCTTTATCAAAATCATGTCAGGGAGGTGTTCAACATTTTAAATCTTGTTCGACCAAAATTTTTGAAGATGGAAACGTCTAAGCCTATTGTCAGGCGCATTCATAGTAGAGTTCATATATCGGGTGTGAGAAGCTTCTATGATCTAGTTGAAAACACTTTGCAGGACACAGATTTCAAAAGGAAAGTGGCTGTCATACAAGATTTGCGTGAGATGACAAGCAATGTCCTTCACTATTATAAAGGGGATTTTCTTGATGAGCTTCCTGGTCTTGTTGATTTTACTGTGGTACTCAATCTTAGCCCTAGACAGAAGCTCGATCTTGAAAAATTAAAAAAGTTATTTAGGAAGTTTAAGCTATCTTCTGTAGGGGGTGCTGTCTATTTGCACCCTAAACTGAAATTTTTAGCTGAAAAATGTGGTGAAAGTAGTATATCAGATAATATAATTGATGATCTGATAGAGAAATTGGATGTGAGAGATGGTGTGAAATCCAAATTCTTTTGGAACATGCTAAATTTGTGTGAATCAGCTGGGGAGAAACTTCTAGTATTTAGTCAATACTTGTTACCTTTGAAATATTTAGAAAGGTTAACCATGAAATGGAAAGGGTGGAGTCTAGGAAAAGAAATCTTTGTAATCTCAGGAGAATCAAGCTATGAGCACCGAGAATGGTCAATGGAAAAATTTAACAGTTCTCCAGATGCCAAAGTCTTCTTTGGATCGATCAAGGCTTGTGGAGAGGGCATATCATTGGTTGGGGCATCACGCATAATTATTTTGGATGTTCATCTCAATCCTTCGGTTACTCGCCAAGCTATTGGTCGTGCATTCAGACCGGGCCAGAAGAAGAAAGTCTTCGTGTATCGGTTGGTAGCTGCGGATTCTCCTGAAGAGGAAGATCACGTTACTTGTTTCAAGAAGGAATTAATTTCAAAAATGTGGTTCGAATGGAACCAGTATTGTGGGGATCGAGCTTTTGAAGTTAAGGCTGTTGGGGTGAAGGAGTGTGGTGATCTCTTTCTGGAAAGTCCACTGTTGGGGGAAGATGTAAAAGCTCTGTATAAAAGACTAAATTAA 2739 0.3998 MESSVDVLSAKCRRPIGFNLEGKGFSPDPDRDKRLKLSNVVEYGNPYTITDVLDRIEHGKFGSVTKDIEALVARKMQILGPYFAKYPILVNQLWEVVSDHNEETPKFEDQQVTGLTDRNVIQLEGGNTDQQVTGLTDQNVIELEGENIVQQVTGLTHQNVIDLVGENTVKVVHAAPNPVVIIDSDEEDDRDKKSIVPFHEVVLPRLVAPPPALKMIEYHTPAPYQGDSKSLKVETSTAGKGNSRGDKGVYIGVQEENAHQVDTEDDGLEDIWKEMSMAIECSKDVSVNPLPDEEVKEDEDCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYASDSRNTKGKADLFGINVAEDDLVVTEISAHPRHMNQMKPHQVEGFNFLVRNLAGNHPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFRTWQVEDVPLYDFYTVKADSRSQQLEVLKQWVDHKSILFLGYKQFSSIVCDNGTNSTSSSCQEILLKVPSILILDEGHNPRNENTDMVQSLAKVQTPRKVVLSGTLYQNHVREVFNILNLVRPKFLKMETSKPIVRRIHSRVHISGVRSFYDLVENTLQDTDFKRKVAVIQDLREMTSNVLHYYKGDFLDELPGLVDFTVVLNLSPRQKLDLEKLKKLFRKFKLSSVGGAVYLHPKLKFLAEKCGESSISDNIIDDLIEKLDVRDGVKSKFFWNMLNLCESAGEKLLVFSQYLLPLKYLERLTMKWKGWSLGKEIFVISGESSYEHREWSMEKFNSSPDAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQKKKVFVYRLVAADSPEEEDHVTCFKKELISKMWFEWNQYCGDRAFEVKAVGVKECGDLFLESPLLGEDVKALYKRLN 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4477g00001 912 Gene3D - 645 895 IPR027417 -
Mupr4477g00001 912 CDD SF2_C_SNF 723 845 - -
Mupr4477g00001 912 SMART ultradead3 376 586 IPR014001 -
Mupr4477g00001 912 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 519 871 IPR027417 -
Mupr4477g00001 912 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 702 886 IPR001650 -
Mupr4477g00001 912 Pfam Helicase conserved C-terminal domain 728 833 IPR001650 -
Mupr4477g00001 912 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 394 573 IPR014001 -
Mupr4477g00001 912 MobiDBLite consensus disorder prediction 224 247 - -
Mupr4477g00001 912 SMART helicmild6 749 834 IPR001650 -
Mupr4477g00001 912 Pfam SNF2-related domain 399 609 IPR000330 GO:0005524|GO:0140658
Mupr4477g00001 912 Gene3D - 350 596 IPR038718 -
Mupr4477g00001 912 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 252 911 IPR044567 GO:0080188
Mupr4477g00001 912 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 587 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4477g00001 Mupr-Chr4477 8116 14789 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4477g00001 731 865 RAD5 or RAD16-like Gene Family AT5G43530 34.559 1.79e-14 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mupr4477g00001 SNF2_N 1.7e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4477g00001 K10875 - gmx:100780454 1404.81