Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4468g00007 ATGGAGGAAGAGGAGGATCGAATTTTGCTCTCTAGTTTGGGCGTAAAGTCTGCCAATCCCGAAGACATTGAACGCGACGTTTTGGAAAAGGCTAGGAATGATTCAGTGACCGTTACTGAAGCCGGAGGTAGCGCCGAGGAAGAATGTTCTGATTTACCTGAAAATGTTGATCCATCTGCTAATGCTAAAGCTGAACTTCATCAGAAGTTGAGAGCTGTCCAATTTGAAATAGATGCGGTTGCTTCCACCGTTGATCAGTTGAGTAATGTTGAAAATAATGCAGAATGTAGTGGTGTTGGTGAGGATGGCTCGGGGCGAGGGATTGCGGAGGATGATTCTTCCGACAATTCAAACCTTCAGCGTGTTCTTGCTGTGGATAGGCTGAGGAGCCTGAAGAAGACGAAAGCTCAACTAGAGAAAGAGCTTTTGAATTTGTCTGCAGACGATGCTTCCAAAAGTGTTGAGCATGAAGAATTGATCTTTAGCTTAGTTAGGGAAGAACGGAAGTTCAAAAGGAAGGTTAAAGAAGATGAAATAACGAACAAAAGCAAAGGAAAAGGAAAGCGGCGTAAGAAAGTCTCATTTGATGACGATGTTGATTTTGATGCTGTTCTGGATGCAGCCTCTGCAGGCTTTGTTGAAACGGAAAGGGATGAACTGGTGAGAAAAGGAATTTTAACCCCTTTTCATAAGTTGAAGGGCTTTGAACGCCGCTTTCAACAACCTGAAACATCAACTAGTCATAATGCAGCTGAGGAAGAAAATACTGGTGATCTTGCTTCTTCCAGTGTTGAAAGAGCTGCCAGATCCATGTATGAGGCAGCAAGATCTCGCCCAACCACCAAGCTGCTTGAGCCTGAAGCTGCACCGAAGCTTGATGCACCCACTTTTCCTTTTCGCAGGCTCAAGAAACCTCTGAAATCTTCCAAACCTCTAGAGAGAGAGGTGGAGCTGAATGAAGATTCAAAAAGGAAAAAGAGGCGGCCTCAGCCTGGTAGGAAATGGACCAAGCGTGTGTCTTGCGAGGATACACATCTGGAAGAAAGTGAAAATGGAAATGGTTGCTTGGATGCTTCCAGTTGTGAAAATTTAGATGAACAAGATGTTGAACTTGATGATCATGAATCTTCTTATGTAACATTAGAAGGTGGGCTGAAAATCCCTGATAACATATTTGAAGCTCTGTTTGACTATCAAAGGGTTGGTGTTCAATGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGGGATGAGATGGGTCTTGGTAAAACTGTCCAGGTATTATCGTTCCTTGGTGCATTGCATTTTAGCGGCATGTTCAAACCCAGCATTATTGTCTGCCCTGTTACACTCTTGCGACAATGGAAAAGGGAAGCTAAAAAGTGGTATCCAAAATTCCATGTAGAGCTTTTACATGATTCTGCTCAGGATTCTGCTCCAAGAAAGAAGCGAGCTAAATCTGACGAAACAGACCATGAAAGCAATAGTTCAAGTGACAATGATTGTGAGAAAAGTGTGCCATCTAGAAACACAAGAAAATGGGAACCCCTGATAAATCGTGTCATGAGATCAGAATCTGGATTACTTATCACCACTTATGAGCAGCTCAGAATATTGAGGGACCAGTTGCTTGACATTGAATGGGGTTATGCAGTTCTTGATGAAGGGCATAAAATAAGGAATCCAAATGCTGAAGTTACCCTAGTTTGCAAACAGCTACAAACTGTACACCGCATCATAATGACTGGTTCACCTATTCAGAACAAACTGTCTGAACTGTGGTCATTGTATGATTTTGTTTTCCCTGGAAAATTGGGTGTTTTGCCTGTATTTGAAGCTGAATTTGCAGTTCCTATAGCAGTTGGTGGATATGCAAATGCTTCACCTTTACAAGTATCCACAGCATACAGGTGTGCTGTGGTGCTGCGTGATTTAATCATGCCTTATCTTCTCCGACGCATGAAGGCTGATGTGAATGCGCAACTCTCAAAGAAAACTGAGCATGTTCTATTTTGCAGCCTTACATCAGAACAAGTATCTGCATATAGAGCATTTTTAGCAAGCACTGACGTGGAGCAAATATTGGATGGACACAGGAATTCTCTTTATGGAATTGATGTGATGCGCAAGATCTGCAACCACCCTGATCTACTTGAAAGGGATCATGCCTTCAGTGATCCAGATTATGGAAATCCAGAACGTAGTGGGAAAATGAAAGTTGTATCTCAAGTGCTTAATGTATGGAAGGAACAGGGTCATCGTGTTCTCCTTTTTACTCAAACCCAACAAATGCTTGACATTTTTGAGAATTTTTTGACAACTTCTGGTCACATTTATCGGAGAATGGATGGTCTCACTCCTGTAAAGCAGAGAATGGCTTTAATAGATGAATTTAATGACTCAAGTGAAATATTTATTTTCATTTTAACAACAAAAGTTGGGGGTTTGGGGACTAATCTTACAGGTGCGGATAGGGTGATCATCTTTGACCCTGACTGGAATCCTTCAACTGATATGCAGGCCAGAGAGCGTGCTTGGCGGATTGGTCAGAAGCGGGATGTGACGGTGTATAGGTTGATCACTCGCGGAACTATAGAGGAGAAAGTGTATCACCGTCAGATTTACAAACATTTTCTTACCAATAAGATATTGAAGAACCCACAGCAGAAAAGGTTCTTTAAAGCCCGGGATATGAAAGATCTTTTCACACTTAATGTGGACGGAGAAACTGGGTCAACTGAAACGTCAAATCTTTTCAGTCAAATATCCGAAGAAGTAAATCTCATTGGGACACATAAAGAAAATAAGGATAAGTATAAACATAGCCAAACTGCTGAGCTAGATTCTGAAGATGTTGCAGGTGGTAATGATGACAAATCAGAGAGGGGATCTTTAAGGGAAAAGGGGAAAGAGAAGGTTGATGATGAAACAAATATATTGAAAAGCCTTTTTGACGCCAATGGGATACATAGTGCCATGAACCATGATTTGATCATGGATGCCCAGGACGAGGAGAAGATGAGACTTGAGGAGCAAGCAACCCAGGTTGCACGAAGATCTGCAGAAGCTTTACGTCAATCACGAATGCTCCGAAGCCATGATAGCATATCTGTTCCGACATGGACAGGAAGGTCAGGAACCGCCGGTGCACCATCATCTGTTCGGCGGAAGTTTGGTTCAACTGTGAATCCCAAGTTGGTAAATAATCGCAAAGCATCTGACGAGTTACCCAGCAATGGAACTAACAAGTTCAATGGATTTGCTGCTGGGGCATCTGCTGGTAAAGCATTATCTTCCGCTGAACTATTGGCTCAAATTCGAGTTAACCAAGAGAAAGCCATTGGTGCTGGGCTTGAACATCAGTTGTTGTCAAGTTCCACTAGTCAAGCAAGATCTACAGATGTTAGATCTTCTAGGGCTACTGAAAATTCATCTGGATTACCACCAGAGGTATTGATTCGGAAAATCTGTACTTTTCTACAACAGCGAGGTGGTAGTTCCGATTCAGCCAGCATAGTTCAGTATTTCAAGGACCATATTCCCTCAAAAGATCTTGCCCTGTTCAAGAATCTGTTAAAGGAAATTGCGACTCTGCATAAAGGATCGAACGGATCCCATTGGGTTCTGAAAGCAGAATATCAATTCTGA 3657 0.4241 MEEEEDRILLSSLGVKSANPEDIERDVLEKARNDSVTVTEAGGSAEEECSDLPENVDPSANAKAELHQKLRAVQFEIDAVASTVDQLSNVENNAECSGVGEDGSGRGIAEDDSSDNSNLQRVLAVDRLRSLKKTKAQLEKELLNLSADDASKSVEHEELIFSLVREERKFKRKVKEDEITNKSKGKGKRRKKVSFDDDVDFDAVLDAASAGFVETERDELVRKGILTPFHKLKGFERRFQQPETSTSHNAAEEENTGDLASSSVERAARSMYEAARSRPTTKLLEPEAAPKLDAPTFPFRRLKKPLKSSKPLEREVELNEDSKRKKRRPQPGRKWTKRVSCEDTHLEESENGNGCLDASSCENLDEQDVELDDHESSYVTLEGGLKIPDNIFEALFDYQRVGVQWLWELHCQRAGGIIGDEMGLGKTVQVLSFLGALHFSGMFKPSIIVCPVTLLRQWKREAKKWYPKFHVELLHDSAQDSAPRKKRAKSDETDHESNSSSDNDCEKSVPSRNTRKWEPLINRVMRSESGLLITTYEQLRILRDQLLDIEWGYAVLDEGHKIRNPNAEVTLVCKQLQTVHRIIMTGSPIQNKLSELWSLYDFVFPGKLGVLPVFEAEFAVPIAVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLSKKTEHVLFCSLTSEQVSAYRAFLASTDVEQILDGHRNSLYGIDVMRKICNHPDLLERDHAFSDPDYGNPERSGKMKVVSQVLNVWKEQGHRVLLFTQTQQMLDIFENFLTTSGHIYRRMDGLTPVKQRMALIDEFNDSSEIFIFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFTLNVDGETGSTETSNLFSQISEEVNLIGTHKENKDKYKHSQTAELDSEDVAGGNDDKSERGSLREKGKEKVDDETNILKSLFDANGIHSAMNHDLIMDAQDEEKMRLEEQATQVARRSAEALRQSRMLRSHDSISVPTWTGRSGTAGAPSSVRRKFGSTVNPKLVNNRKASDELPSNGTNKFNGFAAGASAGKALSSAELLAQIRVNQEKAIGAGLEHQLLSSSTSQARSTDVRSSRATENSSGLPPEVLIRKICTFLQQRGGSSDSASIVQYFKDHIPSKDLALFKNLLKEIATLHKGSNGSHWVLKAEYQF 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4468g00007 1218 Pfam SNF2-related domain 398 720 IPR000330 GO:0005524|GO:0140658
Mupr4468g00007 1218 FunFam DNA excision repair protein ERCC-6 663 941 - -
Mupr4468g00007 1218 Pfam Helicase conserved C-terminal domain 745 852 IPR001650 -
Mupr4468g00007 1218 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 743 902 IPR001650 -
Mupr4468g00007 1218 MobiDBLite consensus disorder prediction 1128 1149 - -
Mupr4468g00007 1218 MobiDBLite consensus disorder prediction 306 326 - -
Mupr4468g00007 1218 Coils Coil 1002 1029 - -
Mupr4468g00007 1218 MobiDBLite consensus disorder prediction 1 58 - -
Mupr4468g00007 1218 MobiDBLite consensus disorder prediction 19 33 - -
Mupr4468g00007 1218 CDD DEXHc_ERCC6 395 605 - -
Mupr4468g00007 1218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 658 919 IPR027417 -
Mupr4468g00007 1218 SMART helicmild6 769 852 IPR001650 -
Mupr4468g00007 1218 Gene3D - 662 956 IPR027417 -
Mupr4468g00007 1218 Coils Coil 121 148 - -
Mupr4468g00007 1218 MobiDBLite consensus disorder prediction 239 263 - -
Mupr4468g00007 1218 MobiDBLite consensus disorder prediction 480 511 - -
Mupr4468g00007 1218 MobiDBLite consensus disorder prediction 94 116 - -
Mupr4468g00007 1218 MobiDBLite consensus disorder prediction 936 976 - -
Mupr4468g00007 1218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 656 IPR027417 -
Mupr4468g00007 1218 CDD SF2_C_SNF 738 863 - -
Mupr4468g00007 1218 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 407 606 IPR014001 -
Mupr4468g00007 1218 SMART ultradead3 391 614 IPR014001 -
Mupr4468g00007 1218 FunFam Protein CHROMATIN REMODELING 8 373 655 - -
Mupr4468g00007 1218 CDD CSB_WHD 1152 1217 - -
Mupr4468g00007 1218 MobiDBLite consensus disorder prediction 236 339 - -
Mupr4468g00007 1218 Gene3D - 364 655 IPR038718 -
Mupr4468g00007 1218 MobiDBLite consensus disorder prediction 1040 1060 - -
Mupr4468g00007 1218 PANTHER SNF2/RAD54 FAMILY MEMBER 168 1199 - -
Mupr4468g00007 1218 MobiDBLite consensus disorder prediction 1128 1148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4468g00007 Mupr-Chr4468 32017 38604 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4468g00007 367 905 RAD5 or RAD16-like Gene Family AT1G02670 23.301 2.98e-27 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mupr4468g00007 SNF2_N 1.1e-58 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4468g00007 K10841 - gmx:100820025 2086.61