Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4465g00001 ATGGGAAGAGGAAGGGTTGTTCTGGAGAGAATAGAGAACAAGATCAACCGCCAAGTAACGTTCTCAAAGCGCAGGAGTGGGTTGCTGAAGAAGGCCTTTGAGCTTTCTGTGCTATGTGATGCTGAAGTTGGCCTTATCATCTTTTCTAGCCGTGGCAAGCTTTTCCAGTACAGCAGCACTGATATTAACAAAATCATTGAGAGGTATCGCCAATGTCGTTACCACAAGTCACATGCTGGCGATTTAGAACTTGAATCACAGAACTCATACCAGGAATTCTTGAAATTAAGAGCGAAATATGAATCTCTTGAGCGGACACAAAGGCATTTCCAAGGAGAAGAACTCGAGCCACTTAGCTTTAAGGAATTGCAGAGCCTTGAGAAACAACTAGACATAACGCTCGCACTAACTCGACAGCACCAAATGAAGAAACTGGTGGCACGAGCAGATGAATTACGCGAAAAGGTGAACAAGTTGGAGGATCTTAACAAACAATTGCAGTCCAAGGAAAAAGATGAATTCTCAGGCCTTATCCTTGACCATAGCAATTGTATTCAATTGCGTGCTACACAAGCCGATCAATTTGAATCTGGGACAACACTAAACACATGGTATGAATTGATTCAACACCATGAAATTGCTTCAAAGGAAAAGGAAATTGACACTAGGACAGAAGGTAGTCAAAGCAGTCACAACAAAAACAGTGGATGGTTGTAG 717 0.424 MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELSVLCDAEVGLIIFSSRGKLFQYSSTDINKIIERYRQCRYHKSHAGDLELESQNSYQEFLKLRAKYESLERTQRHFQGEELEPLSFKELQSLEKQLDITLALTRQHQMKKLVARADELREKVNKLEDLNKQLQSKEKDEFSGLILDHSNCIQLRATQADQFESGTTLNTWYELIQHHEIASKEKEIDTRTEGSQSSHNKNSGWL 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4465g00001 238 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mupr4465g00001 238 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mupr4465g00001 238 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 209 - -
Mupr4465g00001 238 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Mupr4465g00001 238 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Mupr4465g00001 238 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mupr4465g00001 238 Pfam K-box region 85 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr4465g00001 238 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mupr4465g00001 238 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mupr4465g00001 238 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mupr4465g00001 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mupr4465g00001 238 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Mupr4465g00001 238 ProSiteProfiles K-box domain profile. 86 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr4465g00001 238 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Mupr4465g00001 238 Coils Coil 142 172 - -
Mupr4465g00001 238 MobiDBLite consensus disorder prediction 216 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4465g00001 Mupr-Chr4465 3023 12186 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4465g00001 1 169 MADS-box Gene Family AT2G45650 56.471 3.45e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mupr4465g00001 K-box 1.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4465g00001 K09264 - gmx:100793681 391.349