Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4457g00011 CATAGCATTAGCATTAGCATTACCATCGTAGCCAGAAAAAAGGTGTCACTCCTCCACCGGAGCAAAGGAACACCCAAGCTGGATAGGCACAGAGGAGACCGTTACAACAATGATTTTCACAACAACAACAACAATAACTATCGTCACTCCAACAGGGGCAACTCCCACTCGCGCTTCTCCGATTCTCCCATGAGCTACAACAACACGCGCCGGAGCCCGGGCGCTTTTCGCTCCGGTGCTGCCCCTCACCACCGCGCTTTCGATAGTCCGCCGCGTCGCTCTCCCGGCAGGGCTGGAGGCTTCCGCCCGATGGGTGCCGAGGCTCCCGGGGAATTCGGATTCAACGGCCACCACCCGCCGCCGCTGGCTGGCCAGAAACGAGGGTTTCCTTTCTCCGGACGCGGTTGTTCGCCCGGTGACTTTTCTTTTTCTTTCTTCCTTCCCCTTTTTTCGGTTCGCGATTTTGTTGCTATCGAATACTTAGTGTCGAATAGAAGGTTTTCGTTTTCGACGAACTTCAATTGCTACGCCTGCTATCATCTAGATGGTGGAAATTTTGCCAAACTTTTTGTCGGATCTGTTCCCCGAACAGCCACCGAAGAAGATATTCGCCCCTTGTTTGAGGTACATGGGAATGTGATTGAGGTTGCCCTCATCAAAGATAGAAAGACAGGACAGCATCAAGATGGGATCTTGGAGGACCAAATGATCCTGCTCTTGCAATTCCCCTCTCAAATCTTGTTTAGATGCCATGTGGTTGTTTTGCAATTGGAAATGCACGGGTTTGGGATAACATCGGCTCGTGTCTTCTCCCAAATGGTTCTTACAAAGTACACAAGAAGAATCAATCTCATTTGTTTGATAAGTTGCTGTTTCATAAAATATGCTACCTCAGAAGAAGCTGATCAAGCAATTAGAGCATTGCACAATCAACATACTCTTCCTGGAGGTGTTGGTCCAATCCAAGTGCGATATGCTGATGGTGAACGGGAACGCCTCGGTGCAGTTGAGTACAAATTATTTGTGGGCTCTCTGAACAAACAGTCTAGCGTAAAGGAAGTTGAGGAGATTTTCTCAAAATATGGTCGGGTTGAAGATGTTTATCTTATGCGTGATGAGAAGAAACAAAGTCGTGGATGTGGTTTTGTTAAATACTCGCACAGAGATATGGCTCTGGCAGCTATTAATGCACTTAATGGAATCTACACAATGAGAGGTTGTGAGCAACCACTAATTGTCCGGTTTGCTGATCCTAAAAGGCCTCGTCAAGGAGATTCCAGGGGTCTTGCATTTGGAGGCCCTGGATTTGGTCCTAGATTTGATGCACCAGGCACAAGACTTCCATCCAATGTTACAGATCCTATGGGTGATCGTATGCCTCCCCCTAATGCTTGGCGTCCAATGCATCCACCGAATATGGGGCCATCCTCTAATGCTGGCCTTCCTGGCATGGGGCCACCATTGCTTCCAAGATCCGGTGACATGGCATTGCCTACAAATGCAGGTGGTCCTATGACTGGCTTGGGAGGCCCCATAGATGGTCGTTTTCAAGTTCAGTCTATGCCATCAATGTCACAACAGAATTTCAATCAGCCCATGCAACAAATTCCTCCAGTCAATCAACAAATATCACCATTGCAGAAACCTATTCAATCATCCCAGGAATTGCCACCTTCCCACCAGTTGTACCCTCAAGCACCAGTTCCCTACCCACAAACATCTCTTAGGCAGCATGGCCAGCCACAACTTTCTCTCTCTGCTGGTCCTCTTCCATCTCAGCAAATACATGGACAGTTTCCAACTTCTCAGCCCCAAACTCAACAGAGTGCTTTGTCTGCTGCAATTCCTCAGACCCCTCTTGATACTGGCATGCAATCTAATACTGCATTAACTACTCCTAATCAACAGCAAGTTCCTCCCCCTGTGCAGCAGCAGCCACTTCAGCCTCTTCAGCAATCCCCTTCTCCATTAGCTCAGATGTTGTCACAACAAACACAGACTTTGCAAGCAAGCTTTCATTCATCTCAGCAGGCCTTTTCCCAGCTTCAACAACAATTACAGATGATGCAACCTTCTAGTCATGCTTTAACAATGCAGCAAAATGCAGAAGCTACTAAAAAGCAGTCTCATTGGGCTGGGACTGTAGCACAATCAGTGGCTAGCACTCATGCAGCTGCACCTGCTGCAGATGTGCCTTCATCCACACCTGCTACTTCTGCCTTGCCAGCAATAAACCAGAGCATGGCTCTTGCCAAATGTAATTGGACAGAACATTTATCTCCCGAGGGCTTCAAGTACTACTATAATAGTATCACTGGTGAAAGTCGGTGGGAGAAACCTGAAGAGTTGACATTATATGAACAGCAAAAGCAACAGCAAAGGTCATCTGTTCAGCAGTCCCAAACTCAGTCACAGCCTTCAATACTACCTGCCCAGCAAGTTGCACAGATCCAGCAGGTTCAGCCTCAAAGTCATCTCCAAGGACAAGTTCTCCACCAGCAACAAATGCAGCAGCCTTCTTTGTCTTCGTCGGCATATGGAGTTACAGGCCCTCAAAATATTCAGGAAGTTGGTTATAAGCAGTTACATGCATCAGTTATTTCTGCTGGTGACCCAGGACGTTACTCACAGGGTATTCATTCTACACCAGAGTTGATGTGGAAAAATAAGCCTGCA 2676 0.4753 HSISISITIVARKKVSLLHRSKGTPKLDRHRGDRYNNDFHNNNNNNYRHSNRGNSHSRFSDSPMSYNNTRRSPGAFRSGAAPHHRAFDSPPRRSPGRAGGFRPMGAEAPGEFGFNGHHPPPLAGQKRGFPFSGRGCSPGDFSFSFFLPLFSVRDFVAIEYLVSNRRFSFSTNFNCYACYHLDGGNFAKLFVGSVPRTATEEDIRPLFEVHGNVIEVALIKDRKTGQHQDGILEDQMILLLQFPSQILFRCHVVVLQLEMHGFGITSARVFSQMVLTKYTRRINLICLISCCFIKYATSEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQSSVKEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFADPKRPRQGDSRGLAFGGPGFGPRFDAPGTRLPSNVTDPMGDRMPPPNAWRPMHPPNMGPSSNAGLPGMGPPLLPRSGDMALPTNAGGPMTGLGGPIDGRFQVQSMPSMSQQNFNQPMQQIPPVNQQISPLQKPIQSSQELPPSHQLYPQAPVPYPQTSLRQHGQPQLSLSAGPLPSQQIHGQFPTSQPQTQQSALSAAIPQTPLDTGMQSNTALTTPNQQQVPPPVQQQPLQPLQQSPSPLAQMLSQQTQTLQASFHSSQQAFSQLQQQLQMMQPSSHALTMQQNAEATKKQSHWAGTVAQSVASTHAAAPAADVPSSTPATSALPAINQSMALAKCNWTEHLSPEGFKYYYNSITGESRWEKPEELTLYEQQKQQQRSSVQQSQTQSQPSILPAQQVAQIQQVQPQSHLQGQVLHQQQMQQPSLSSSAYGVTGPQNIQEVGYKQLHASVISAGDPGRYSQGIHSTPELMWKNKPA 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4457g00011 892 SUPERFAMILY RNA-binding domain, RBD 338 439 IPR035979 GO:0003676
Mupr4457g00011 892 MobiDBLite consensus disorder prediction 648 669 - -
Mupr4457g00011 892 CDD WW 752 782 IPR001202 GO:0005515
Mupr4457g00011 892 ProSiteProfiles WW/rsp5/WWP domain profile. 755 782 IPR001202 GO:0005515
Mupr4457g00011 892 MobiDBLite consensus disorder prediction 21 37 - -
Mupr4457g00011 892 FunFam Flowering time control protein FCA 334 424 - -
Mupr4457g00011 892 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 228 IPR000504 GO:0003723
Mupr4457g00011 892 MobiDBLite consensus disorder prediction 544 669 - -
Mupr4457g00011 892 Pfam WW domain 754 780 IPR001202 GO:0005515
Mupr4457g00011 892 SMART rrm1_1 188 324 IPR000504 GO:0003723
Mupr4457g00011 892 SMART rrm1_1 339 414 IPR000504 GO:0003723
Mupr4457g00011 892 MobiDBLite consensus disorder prediction 418 517 - -
Mupr4457g00011 892 SMART ww_5 750 782 IPR001202 GO:0005515
Mupr4457g00011 892 MobiDBLite consensus disorder prediction 38 74 - -
Mupr4457g00011 892 SUPERFAMILY RNA-binding domain, RBD 183 332 IPR035979 GO:0003676
Mupr4457g00011 892 ProSitePatterns WW/rsp5/WWP domain signature. 755 780 IPR001202 GO:0005515
Mupr4457g00011 892 MobiDBLite consensus disorder prediction 544 638 - -
Mupr4457g00011 892 PANTHER RNA BINDING PROTEIN 66 677 - -
Mupr4457g00011 892 Gene3D - 183 334 IPR012677 -
Mupr4457g00011 892 SUPERFAMILY WW domain 754 787 IPR036020 GO:0005515
Mupr4457g00011 892 Gene3D - 750 799 - -
Mupr4457g00011 892 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 338 418 IPR000504 GO:0003723
Mupr4457g00011 892 MobiDBLite consensus disorder prediction 21 102 - -
Mupr4457g00011 892 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 228 IPR000504 GO:0003723
Mupr4457g00011 892 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 340 407 IPR000504 GO:0003723
Mupr4457g00011 892 Gene3D - 335 426 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4457g00011 Mupr-Chr4457 73257 83551 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4457g00011 292 440 Eukaryotic Initiation Factors Gene Family AT2G23350 27.381 4.18e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4457g00011 - - gmx:100798390 945.266