Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4452g00003 ATGGCTCCTTCTCAGCCACCCCACTGGGCCCCATCTCCAACACCAATCCTCAACAACAACTCTTTCTTACCCCCGAACTCAAACTCGCCGGCGGTTGACTTCAGCCCACCCTTGATAGCAATGGTCGTCGTGGTCGCCGCCGCCTTTCTCGTCGTAACATACTCCCGCCTGATCGCGCGCCATCTCAGGCCGCCCATCCACCGTCTCCTAGGGCGCTTCAGACGGCGGCGCTTCCTTCCATCCTCCGTGGGCGACATGGACTCGCTCCCTTACGAGTCTCCCTTCGATGGGCCGCACGTATTCTCTCCCTACGGTTTGGACGAAACGGTGATAAAGACGATCCCGTTCTCGCTTTATACGGCCAAATACGACGCGCGTTTCGAAGAGTCTCGCAACGACTGTGCCGTTTGCTTGCTCGAATTCGAAGACGAAGACTACGTGAGAACGCTCCCCGTTTGCTCACACACGTTCCACGTTGACTGCATCGATGCGTGGCTTCGCTCCCACGCTAACTGCCCTCTTTGCCGCGCTGGAGTCCTCTGTGCCGATTCACCTTTCACTCCAATGATGGCCGCCAGAATCCGACCAAGCCTCGACGACGACACAATTCTCCACCGCATCACCATCGAGCGTCTCCTCGATCCGCCGCCCCCTCCTCGGGCTACGGTGGCTATCTCCTCCGTGCCGGAGATCACGCCCTGCGTCGACGACAACTCTCCGAGGAGGAATCACGCGAATGCTAATTCAGAGGATCGTTTCAACGCTAGGGATTTTCTGCTTAAGAGGTCTTATTCGTTTGGGTTCGAGCGGAGTCTCGCGTCCGAGAGGATGGTGATGGAACCGGCGACCGCGTCGCCGTGGCGGTACCGGAGAGGGAGTAGTAGTTTCTGGAGTAAGAGGCCTTCTCCTTTTGGGTCTTTGGGGAAGCCGAGGGTGTTTTCGTTTCGGTATTATAGAGGGATGAAGTCTCCCTTCTTCCGGCGGCGGGGATTTTTTCCGTTGTCGGAGTCTAGCGTGAGGTACGGCGGTGGCGGGAGTTCGTCGCGGCGGAGCAAGTCGATAGCGAGTCCGATGTTTCTGCGGTCGTCGGGGGTGGCGGCGGCGGCGTTCTCGTCGAGCCGGCTGAGGTGCGGGGATCCCGAAGCGCTGCTGTCGCCGGAGAGGTTTAACCGAAGAAAAAACAGTGTTGCGGTAGGCCAGGATCCACTTTCTCGTAAGGCCGAACGCAGAGACAAATTTATTTGCTGTGAATATTCAATTAAGATCATTCTTCTTCGGCCAGATGAGATGATGCAGGGTGCTGCTTTGTTGGTTAGCCAAGTGGCTTCACTATCAGCTGAGACCATTAATGTGCATGTTATAGTATCCATCAATATAATAGTTATATGTTTTCCAGAGTTTGATGCAGATGAATAA 1416 0.5586 MAPSQPPHWAPSPTPILNNNSFLPPNSNSPAVDFSPPLIAMVVVVAAAFLVVTYSRLIARHLRPPIHRLLGRFRRRRFLPSSVGDMDSLPYESPFDGPHVFSPYGLDETVIKTIPFSLYTAKYDARFEESRNDCAVCLLEFEDEDYVRTLPVCSHTFHVDCIDAWLRSHANCPLCRAGVLCADSPFTPMMAARIRPSLDDDTILHRITIERLLDPPPPPRATVAISSVPEITPCVDDNSPRRNHANANSEDRFNARDFLLKRSYSFGFERSLASERMVMEPATASPWRYRRGSSSFWSKRPSPFGSLGKPRVFSFRYYRGMKSPFFRRRGFFPLSESSVRYGGGGSSSRRSKSIASPMFLRSSGVAAAAFSSSRLRCGDPEALLSPERFNRRKNSVAVGQDPLSRKAERRDKFICCEYSIKIILLRPDEMMQGAALLVSQVASLSAETINVHVIVSINIIVICFPEFDADE 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4452g00003 471 PANTHER RING-H2 FINGER PROTEIN ATL16 21 204 IPR044600 GO:0016567|GO:0016740
Mupr4452g00003 471 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
Mupr4452g00003 471 SMART ring_2 134 175 IPR001841 -
Mupr4452g00003 471 CDD RING-H2_EL5-like 133 176 - -
Mupr4452g00003 471 Pfam Ring finger domain 132 176 IPR001841 -
Mupr4452g00003 471 FunFam RING-H2 finger protein ATL65 99 180 - -
Mupr4452g00003 471 SUPERFAMILY RING/U-box 118 181 - -
Mupr4452g00003 471 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 180 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4452g00003 Mupr-Chr4452 11099 16005 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4452g00003 27 397 C3H Transcription Factor Family AT3G18930 51.238 3.91e-98 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4452g00003 - K19041 gmx:100795347 679.478