Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4425g00008 ATGCTGCTGAATCATCCCATGGCAAGTAGGTGTGTGCTCGGATCTGAAACCTTTCTTAAGGGATCGGAGTCTACCACTCTGACCAAAGTAATGATGGAATCTCAGGTGAAACATGCTATCGTCGTCAAAGTTATGGGTCGTACTGGATCTAGAGGGCAGGTGACTCAGGTTAGAGTGAAGTTTTTGGATGATCAAAACCGACACATCATGAGGAACGTGAAAGGACCAGTGAGAGAAGGAGACATTCTTACCCTACTCGAGTCTGAGAGAGAAGCAAGGAGGCGAACTTAA 291 0.4639 MLLNHPMASRCVLGSETFLKGSESTTLTKVMMESQVKHAIVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESEREARRRT 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4425g00008 96 CDD S1_S28E 37 94 IPR000289 GO:0003735|GO:0005840|GO:0006412
Mupr4425g00008 96 Pfam Ribosomal protein S28e 35 94 IPR000289 GO:0003735|GO:0005840|GO:0006412
Mupr4425g00008 96 Hamap 30S ribosomal protein S28e [rps28e]. 7 96 IPR000289 GO:0003735|GO:0005840|GO:0006412
Mupr4425g00008 96 SUPERFAMILY Nucleic acid-binding proteins 31 94 IPR012340 -
Mupr4425g00008 96 FunFam 40S ribosomal protein S28 29 96 - -
Mupr4425g00008 96 PANTHER 40S RIBOSOMAL PROTEIN S28 32 94 IPR000289 GO:0003735|GO:0005840|GO:0006412
Mupr4425g00008 96 Gene3D - 28 95 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4425g00008 Mupr-Chr4425 56990 58827 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4425g00008 32 94 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 87.302 1.95e-34 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4425g00008 K02979 - qsa:O6P43_005779 124.405