Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4405g00001 ATGCACTTAACCCTGTTTGTATCTTTTGGGCAAGTGAAACCAGTTCAGAGTATGGCACAGGGGCCAATCATCGCCACGCTCTTGCTCTGCACCCTTCTCTCCCTCTCTCTAAAGATTCTTCATTCGTCTGCTTTCATCACAAACACTGCATCAACACACACATACACACACTCTTATTTTCTTCACTCTTTTGATTGCAACACGTTTCTCTTCAATTTGTTGTATACCCATTTGGTTTTAGGTGCCAAAGGACCAAGTTGTTGTGTCCCCGAGGCCCCTCTCTCTCTCCTCTCCCCTTCGAGCTCTAGGAAGGGTGATGCAATGAGGCAGTCTTTTGATCCTTCGTCTTTGGGTCCTTCCAAGATTCCATCTATAAAAATACCTGGAAAATCAGGGAATGGTGCATGGGAGGCTTTGTCTGGATCTGATTCCTACCATGCTTCATCTGATGCTAGCCTCTTTTCCAGCTCATTACCTGTTCTTCCACATGAAAAATTCAACTTGAATGAAACTGCAAATGGTTATCAATCTGTTGACGACATCTCATCTGGCTTTAAGAAGCTCCATCAAGATGAAGAGGGCAATGGTTCACTTGAAGATGGTGATACTCATGCCATTGGAACCATGCTTCCTGGTGATGAGGAAGAGCTTTTAGCTGGCATAATGGAAGATTTTGACCTAAGTGGTTTGCCTGGTTCCCTTGAGGACTTGGAAGAGTATGATCTTTTTGGTATGGAACTAGAAACTGATCTACAAGAAAGTATCACTGTGGGTATGTCTAAGTTAAGCTTACCTGATAGTACTGTTGGCAATGGTTTACCCCATTATTCTCTTCCCAATGGTGTGGGAACTGTTGCTGGAGAACATCCATATGGAGAGCATCCTTCTCGAACATTATTTGTTCGAAATATTAACAGTAACGTGGAGGATTCAGAGCTGAGAGCTCATTTTGAGCAATATGGTGATATTAGAACCCTATATACTGCATGCAAACATCGGGGATTTGTAATGATATCCTATTATGACATCCGTGCTGCTCGAACGGCTATGCGTGCATTACAAAACAAACCTCTGCGGCGGAGGAAACTTGACATTCACTTCTCAATTCCAAAGGATAATCCATCAGACAAGGATATCAACCAAGGAACATTGGTCGTTTTCAATCTGGATCCATCTGTATCAAATGAAGACCTCCGACAGATATTTGGGGCTTATGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCACAAGTTTATTGAATTTTATGATGTCAGAGCTGCAGAAGCAGCGCTTAAATCATTAAACAGGAGTGACATAGCTGGTAAACGCATAAAGCTTGAACCTAGTCGGCCTGGAGGAGCTCGTCGAAATTTGATGCTCCAATTAAATCAAGAAATTGACCAAGATGAATCTCGGAGTTTCCGGTATCAAGTGGGTTCACCTGTAGCTAACTCTCCTCCAGGTAACTGGTTACAGTTCAACAGTCCTGTTGAGCAGAACTCAATGCAAACTATCAATCATTCTCCTGGTTCTAGGATCATGAGCCCAACAACAGGCAACCATTTACCTGGATTAGCTTCAATTTTGCAACCACAGGTATCTAACACTGTGAAGGCTGCTGCTATTGGCAATGACTTGGGAAGGAGCAGTCATGGAGAGCATATATTTACTGGTATGAATTCATCACATGCAGCTACTTTTCAGTCACATTCACTTCCAGAGCCAAAATTCAGCCAATATCGTGGAGCGTTGTCCTCTTTTGTTCCATCAACATCAAATGGATCCTCAGTAGAAACTTTGTCTGGGCCACAGTTTCTATGGGGAAGTCAAACCCTCTACTCGGAGCATACCAAACCTTTAGCTTGGCCAAGATCATCTGTGGGACACCCATTTGCATCCAACGGAAAGAGCCATGCTTTCCCATACTCTAGTCAGAATAGTTCCTTTGTTGGTTCATCCCAGCATCATCACAATCCTCATGTTGGCTCTGCCCCATCAGGATTGCCTTTTGAGAGGCACTTTGGTTTCAATCTGGAGTCACCTGACACTTCATTCATGAATAATGTTGGTTATGGAGGCATGGGTCTAGGGCACAGTGATGGAAATTACATGGTTAATGTGGGTGGATCTGTTAATACTAACATTACTATCCCGAGAAATATATCTGATAATGGTTCATCAAACTTCATGAGATCTTCTCCTAGGCTTAGCCCTGTCTTTTTGGGAAATGGTCCTTTTCCTGGACTTCCGCCTTCCACTTTCGAGGGTTTGGCTGACCGTGCTCGGAGTAGATGGATGGAGAACAATGGGAGCCAAGTTGATAGCAAGAAGCAATTTCAGCTTGACTTGGATAAGATTAAAAGTGGTGAAGATACAAGGACTACTTTAATGATAAAGAATATCCCAAACAAATACACCTCAAAAATGTTATTAGCTGCCATTGATGAAAATCACAGGGGTACTTATGATTTTCTCTATTTGCCAATTGATTTTAAGAATAAATGCAACGTGGGCTATGCATTTATCAACATGCTGTCACCCTCTCTTATTATTCCATTCTACGAGACATTCAACGGGAAGAAATGGGAGAAATTTAATAGTGAAAAAGTTGCTTCTTTGGCATATGCTCGAATCCAGGGAAAGTCTGCCCTTGTGAGCCACTTCCAAAATTCAAGTTTGATGAATGAAGACAAGCGATGCCGCCCTATTCTCTTCCACTCAGAGGGTTCTGAAGTTGGTGATCTGATTGTACAAGAGCATCTTCCCTCCAACTCCAACAATCTAAACATTCAGGCACTAAGGCCAAGTGAGTTACATTTAAGTGATTCTGTTGGGAGTCCTCCAAAGGCAGGCCCTTCTGCAAGCTTGGATACAAATTAA 2892 0.4274 MHLTLFVSFGQVKPVQSMAQGPIIATLLLCTLLSLSLKILHSSAFITNTASTHTYTHSYFLHSFDCNTFLFNLLYTHLVLGAKGPSCCVPEAPLSLLSPSSSRKGDAMRQSFDPSSLGPSKIPSIKIPGKSGNGAWEALSGSDSYHASSDASLFSSSLPVLPHEKFNLNETANGYQSVDDISSGFKKLHQDEEGNGSLEDGDTHAIGTMLPGDEEELLAGIMEDFDLSGLPGSLEDLEEYDLFGMELETDLQESITVGMSKLSLPDSTVGNGLPHYSLPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRAHFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQEIDQDESRSFRYQVGSPVANSPPGNWLQFNSPVEQNSMQTINHSPGSRIMSPTTGNHLPGLASILQPQVSNTVKAAAIGNDLGRSSHGEHIFTGMNSSHAATFQSHSLPEPKFSQYRGALSSFVPSTSNGSSVETLSGPQFLWGSQTLYSEHTKPLAWPRSSVGHPFASNGKSHAFPYSSQNSSFVGSSQHHHNPHVGSAPSGLPFERHFGFNLESPDTSFMNNVGYGGMGLGHSDGNYMVNVGGSVNTNITIPRNISDNGSSNFMRSSPRLSPVFLGNGPFPGLPPSTFEGLADRARSRWMENNGSQVDSKKQFQLDLDKIKSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKSALVSHFQNSSLMNEDKRCRPILFHSEGSEVGDLIVQEHLPSNSNNLNIQALRPSELHLSDSVGSPPKAGPSASLDTN 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4405g00001 963 FunFam MEI2-like protein 5 isoform 2 286 380 - -
Mupr4405g00001 963 CDD RRM3_MEI2_like 800 885 IPR034454 -
Mupr4405g00001 963 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 297 370 IPR000504 GO:0003723
Mupr4405g00001 963 SUPERFAMILY RNA-binding domain, RBD 799 883 IPR035979 GO:0003676
Mupr4405g00001 963 Gene3D - 286 380 IPR012677 -
Mupr4405g00001 963 CDD RRM2_MEI2_like 381 451 - -
Mupr4405g00001 963 MobiDBLite consensus disorder prediction 649 664 - -
Mupr4405g00001 963 PANTHER RNA RECOGNITION MOTIF-CONTAINING 105 923 - -
Mupr4405g00001 963 MobiDBLite consensus disorder prediction 943 963 - -
Mupr4405g00001 963 Pfam RNA recognition motif 2 797 893 IPR007201 -
Mupr4405g00001 963 CDD RRM1_MEI2_like 296 372 IPR034453 -
Mupr4405g00001 963 SMART rrm1_1 799 875 IPR000504 GO:0003723
Mupr4405g00001 963 SMART rrm1_1 298 366 IPR000504 GO:0003723
Mupr4405g00001 963 SMART rrm1_1 383 451 IPR000504 GO:0003723
Mupr4405g00001 963 MobiDBLite consensus disorder prediction 99 118 - -
Mupr4405g00001 963 SUPERFAMILY RNA-binding domain, RBD 294 457 IPR035979 GO:0003676
Mupr4405g00001 963 MobiDBLite consensus disorder prediction 649 670 - -
Mupr4405g00001 963 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 299 363 IPR000504 GO:0003723
Mupr4405g00001 963 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 384 449 IPR000504 GO:0003723
Mupr4405g00001 963 Gene3D - 381 479 IPR012677 -
Mupr4405g00001 963 FunFam Protein MEI2-like 1 381 476 - -
Mupr4405g00001 963 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 382 455 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4405g00001 Mupr-Chr4405 1120 8823 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4405g00001 292 490 Eukaryotic Initiation Factors Gene Family AT1G71770 25.561 1.27e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4405g00001 - - gmx:100800877 1576.99