Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4390g00005 ATGTTGTTACTCCGTTTGAATCCATGGGATGGCTCCATGAGAAAGGCTGTGGCAACAGGAGAGGCAGTAAACCCAAAAGCATACCCTCTGGCCGATTCGCAGCTCACAATAACGATACTGGATCTTGTGCAACAAGCTGCCAACTACAAGCAACTCAAAAAGGGTGCTAATGAAGCCACCAAGACACTGAACAGAGGCATTTCTGAGTTTGTTGTGATGGCCGCAGACACTGAGCCTCTTGAGATTCTTCTCCATCTTCCTCTGCTTGCTGAGGACAAGAATGTTCCCTATGTATTCGTCCCGTCAAAACAAGCACTTGGGCGAGCATGTGGAGTCACACGGCCAGTGATTGCTTGTTCTGTAACAACTAATGAAGGAAGTCAACTGAAATCCCAAATTCAGCAACTAAAGTGTATTTAA 420 0.4619 MLLLRLNPWDGSMRKAVATGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKCI 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4390g00005 139 CDD SNU13 24 137 - -
Mupr4390g00005 139 PRINTS Ribosomal protein L7A/RS6 family signature 97 111 IPR018492 -
Mupr4390g00005 139 PRINTS Ribosomal protein L7A/RS6 family signature 87 97 IPR018492 -
Mupr4390g00005 139 PRINTS Ribosomal protein L7A/RS6 family signature 52 66 IPR018492 -
Mupr4390g00005 139 PRINTS Ribosomal protein L7A/RS6 family signature 71 84 IPR018492 -
Mupr4390g00005 139 FunFam NHP2-like protein 1 homolog 18 139 - -
Mupr4390g00005 139 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 40 128 IPR004038 -
Mupr4390g00005 139 ProSitePatterns Ribosomal protein L7Ae signature. 90 107 IPR004037 GO:0042254|GO:1990904
Mupr4390g00005 139 Gene3D - 16 139 IPR029064 -
Mupr4390g00005 139 PRINTS High mobility group-like nuclear protein signature 25 38 IPR002415 GO:0003723|GO:0005730
Mupr4390g00005 139 PRINTS High mobility group-like nuclear protein signature 38 53 IPR002415 GO:0003723|GO:0005730
Mupr4390g00005 139 PRINTS High mobility group-like nuclear protein signature 99 111 IPR002415 GO:0003723|GO:0005730
Mupr4390g00005 139 PRINTS High mobility group-like nuclear protein signature 55 65 IPR002415 GO:0003723|GO:0005730
Mupr4390g00005 139 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 16 137 - -
Mupr4390g00005 139 SUPERFAMILY L30e-like 23 135 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4390g00005 Mupr-Chr4390 36339 39341 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4390g00005 52 107 Cytoplasmic Ribosomal Protein Gene Family AT2G47610 35.714 9.40e-06 42.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4390g00005 K12845 - qsa:O6P43_023081 222.631