Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4354g00004 ATGGCGTACCACAACCCCCAAGACCTTCCACTTCACCATTTCACAGACCATAACCATAACCATAACCATAACCAACCTCTCACTGATACCTCCATGCTCTCCGACCCTACCTCCAAACCTGGCTCCGATCCTCACCAACCCGCGCCAAATTGGCTCAACAACGCCCTTCTCCGCACGCACTACACCGACAACAACAACAACACCACCACCACCAACAACAACAACAACTCATCCAACACCAACGTTAACGCTGCCGGCAACAACAACGGCACCAACTTCCTCAACCTCCACACTGCCGCTTCCGACTCCGCCGGCGCCGGCCAATGGCTGGCCCGCCCGGTCCTCCACCGCAACCACAGCGAGGTCATCGACGACGGCGGCGAATCCGGCGATTTGAAGGGTGAGAAGGCGGTGGATGGCGGAGGCGACGGACTTATGAACTGGCAGAATGCGAGGTTGAAGGCGGAGATTCTGTCGCATCCTCTGTACGAACAGCTTCTGTCGGCACACGTGGCGTGCTTGCGGATCGCCACACCGGTGGACCAGTTGCCGAGGATCGACGCTCAGCTCGCGCAGTCCCAGAATGTGGTCGCCAAGTACTCTGCCTTTGGACAACCCATCGTTGGGGATGACAAGGAACTTGATCAATTCTTGTCGCACTATGTTTTGTTGCTCTGTTCTTTCAAAGAACAACTCCAACAGCATGTCCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATCGAGCAGTCCTTACAAAGTTTAACAGGAGTTTCACCCGGGGAGGGTACGGGAGCAACAATGTCTGATGACGAAGATGAGCAAGTAGACAGTGATGCAAATCTGTTTGATGGTGGTTTGGACGGTCCTGATAGCATGGGATTCGGTCCTCTTATTCCCACAGAGAACGAGAGGTCCCTCATGGAACGTGTAAGACATGAATTAAAGCACGAATTGAAACAGGGTTATAAAGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACCACCTCTGTCCTTAAAGATTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACGGAGGAGGATAAGGCACGGTTGGTGCAGGAAACGGGTTTGCAATTAAAGCAGATCAATAATTGGTTCATCAATCAAAGGAAGAGGAACTGGCATAGCAATCCTTCAACCTCTACGGTCTTAAAGAGCAAGCGCAAAAGGGGATAA 1245 0.5189 MAYHNPQDLPLHHFTDHNHNHNHNQPLTDTSMLSDPTSKPGSDPHQPAPNWLNNALLRTHYTDNNNNTTTTNNNNNSSNTNVNAAGNNNGTNFLNLHTAASDSAGAGQWLARPVLHRNHSEVIDDGGESGDLKGEKAVDGGGDGLMNWQNARLKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGQPIVGDDKELDQFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDEQVDSDANLFDGGLDGPDSMGFGPLIPTENERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKDWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKRG 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4354g00004 414 MobiDBLite consensus disorder prediction 47 82 - -
Mupr4354g00004 414 Pfam KNOX2 domain 208 258 IPR005541 GO:0003677|GO:0005634
Mupr4354g00004 414 Pfam KNOX1 domain 153 194 IPR005540 GO:0003677|GO:0005634
Mupr4354g00004 414 SMART KNOX1_2 151 195 IPR005540 GO:0003677|GO:0005634
Mupr4354g00004 414 CDD homeodomain 339 400 IPR001356 GO:0003677
Mupr4354g00004 414 Gene3D - 335 408 - -
Mupr4354g00004 414 SUPERFAMILY Homeodomain-like 338 401 IPR009057 -
Mupr4354g00004 414 SMART HOX_1 338 403 IPR001356 GO:0003677
Mupr4354g00004 414 Pfam ELK domain 316 337 IPR005539 GO:0003677
Mupr4354g00004 414 Pfam Homeobox KN domain 356 395 IPR008422 GO:0003677|GO:0006355
Mupr4354g00004 414 SMART ELK_2 316 337 IPR005539 GO:0003677
Mupr4354g00004 414 MobiDBLite consensus disorder prediction 24 41 - -
Mupr4354g00004 414 FunFam homeobox protein knotted-1-like 3 isoform X1 337 398 - -
Mupr4354g00004 414 MobiDBLite consensus disorder prediction 1 82 - -
Mupr4354g00004 414 ProSiteProfiles ELK domain profile. 316 336 IPR005539 GO:0003677
Mupr4354g00004 414 SMART KNOX2_2 204 259 IPR005541 GO:0003677|GO:0005634
Mupr4354g00004 414 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 73 398 - -
Mupr4354g00004 414 MobiDBLite consensus disorder prediction 259 278 - -
Mupr4354g00004 414 ProSiteProfiles 'Homeobox' domain profile. 336 399 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4354g00004 Mupr-Chr4354 61522 65822 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4354g00004 1 413 Homeobox Transcription Factor Family AT5G25220 65.570 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mupr4354g00004 KNOX2 1.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4354g00004 - - pvu:PHAVU_009G090500g 707.212