Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4332g00003 ATGGATTTTGACGAGTATGAGTATTTAGAGAAAACAGTTGAAAACCCTGAAGATAAGAAGGAGAAGCACAGGGCTAATGGTGGGGGCAAGAGTGTAAAATCCGAAGATAGAGGGCGTAATGGGAGTTCCAAGCATAAGGGTGGTGAGAAGGATGATGATTTTGATCTCCATTCCAAGCATTCCAAATCCGGAGATGATTCTCGCGATTACGAGAGGCAGAGAGAAAGAGGCTCCTCCCGCCATGGTTCACAGTCCAGAGGTGGGGACAAGGAGAAGGATCAGCACAGAAGCTCTGGGAGCAGTAGGGATAGGAAGAGGGATAGGGACAGAGACCATGAGGACAAGGATAGGAAGAGAGATAGAGAGAGAGACAGAGACCGCGATCGTGACCATGAAAGGGACAAAAGGGACCGTGGGAGTGAGGGTGAACGGGAACGGCGAAGCAGAAGTAGATCCGATAGGCATCGAGGTGATCTGGATGATAGGGACAGAGAGACAAGTCGTGACAGGGACTATAGAGATAGAGAAAGAAGCCGGGATAAGGATTTCAGAGACAGAGAAAGGGTGAGGGAATCAAGGGAACGGGATAGAGAAAGCAGGCGACATAAAGAGAAAAAGGAAGAAACAACAGAACCTGAGGTTGACCCTGAAAGAGATCAAAGAACTGTGTTTGCTTATCAGATTTCTCTGAAAGCAGATGAAAGAGATGTATATGAGTTCTTCTCAAGAGCTGGCAAGGTGCGGGATGTTCGCTTGATTATGGACCGCAATTCAAGACGTTCTAAGGGTGTTGGGTATATTGAGTTTTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCGGGCCAACCTCTTCTTGGTCAACCGGTGATGGTGAAACCATCAGAAGCAGAAAAGAATTTGGTCCAGTCCACAACATCTGTGGCTAGTGGACCCACTGGACTTATAGGCCCTTATTCTGGGGGAGCAAGAAGGCTGTATGTTGGAAATCTGCATATCAGTATTACTGAAGCTGATCTTCGTAGGGTGTTTGAAGCATTTGGTCTGGTTGAGCTAGTCCAGTTGCCTCTTGATGAAAGTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGCCTTGAAGATGCAAGAAATGCTCAGAGCTTGAATGGTCAATTAGAGATTGGTGGTAGGACAATCAAGGTATCAGCTGTTACTGACCAATCTGGGATGCAAGAAGTTGGAGGAAATACTGGTGATTTTGATGATGATGAAGGAGGAGGCTTGTCCTTGAATGCATGTTCTCGAGCATTACTCATGCAGAAGTTGGATCGCAGTGGCACTGCATCAAGCATGGTTGGTTCCCTCGGTAGTTCTGTTGTCAACAGCACAGGTCTTAATCTACCAGCAACAGGAAACATACCCGCAGCTGCATCTCTGGTTTCTCCTGTTCCTGCAGTAGCTGGATTGGCAAGTGGAAGTCTCCAAATTCCCACGGCTGCAATTCCTTCCATTGATACAATCGGTGTTCCAAGTGAATGCTTAATGTTGAAGAATATGTTTGATCCGAAAGATGAGACTGAACCAGATTTTGATTTGGATATTAAAGAAGATGTTGAAGCAGAATGCTCCAAGTTCGGGGCGTTAAAACACATATATGTTGATAAGAAGAGTGCTGGTTTTGTCTACCTACGATTTGAAGATACCAAATCTGCAGTAAGTGCACAGCAAGCCTTGCACGGAAGATGGTTTGCTGGAAAGATGATCACTACAAGCTTCATGGTGCCTCACTCATATGAGGATAAATTCCCAGACAGCAGATAA 1809 0.4594 MDFDEYEYLEKTVENPEDKKEKHRANGGGKSVKSEDRGRNGSSKHKGGEKDDDFDLHSKHSKSGDDSRDYERQRERGSSRHGSQSRGGDKEKDQHRSSGSSRDRKRDRDRDHEDKDRKRDRERDRDRDRDHERDKRDRGSEGERERRSRSRSDRHRGDLDDRDRETSRDRDYRDRERSRDKDFRDRERVRESRERDRESRRHKEKKEETTEPEVDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVASGPTGLIGPYSGGARRLYVGNLHISITEADLRRVFEAFGLVELVQLPLDESGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAVTDQSGMQEVGGNTGDFDDDEGGGLSLNACSRALLMQKLDRSGTASSMVGSLGSSVVNSTGLNLPATGNIPAAASLVSPVPAVAGLASGSLQIPTAAIPSIDTIGVPSECLMLKNMFDPKDETEPDFDLDIKEDVEAECSKFGALKHIYVDKKSAGFVYLRFEDTKSAVSAQQALHGRWFAGKMITTSFMVPHSYEDKFPDSR 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4332g00003 602 CDD RRM1_RBM39_like 222 294 - -
Mupr4332g00003 602 Gene3D - 320 426 IPR012677 -
Mupr4332g00003 602 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 231 290 IPR000504 GO:0003723
Mupr4332g00003 602 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 532 584 IPR000504 GO:0003723
Mupr4332g00003 602 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 327 396 IPR000504 GO:0003723
Mupr4332g00003 602 SUPERFAMILY RNA-binding domain, RBD 216 313 IPR035979 GO:0003676
Mupr4332g00003 602 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 221 298 IPR000504 GO:0003723
Mupr4332g00003 602 MobiDBLite consensus disorder prediction 1 219 - -
Mupr4332g00003 602 SUPERFAMILY RNA-binding domain, RBD 325 595 IPR035979 GO:0003676
Mupr4332g00003 602 CDD RRM3_RBM39_like 507 589 - -
Mupr4332g00003 602 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 508 591 IPR000504 GO:0003723
Mupr4332g00003 602 FunFam Splicing factor CC1-like 157 306 - -
Mupr4332g00003 602 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 416 526 IPR029123 -
Mupr4332g00003 602 FunFam CC1-like, splicing factor 320 428 - -
Mupr4332g00003 602 FunFam Splicing factor, CC1-like protein 503 602 - -
Mupr4332g00003 602 Gene3D - 153 308 IPR012677 -
Mupr4332g00003 602 SMART rrm1_1 222 294 IPR000504 GO:0003723
Mupr4332g00003 602 SMART rrm1_1 326 398 IPR000504 GO:0003723
Mupr4332g00003 602 SMART rrm1_1 509 587 IPR000504 GO:0003723
Mupr4332g00003 602 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 601 IPR006509 GO:0003723|GO:0005634|GO:0006397
Mupr4332g00003 602 NCBIfam splicing factor, CC1-like family 101 600 IPR006509 GO:0003723|GO:0005634|GO:0006397
Mupr4332g00003 602 Gene3D - 503 602 IPR012677 -
Mupr4332g00003 602 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 325 402 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4332g00003 Mupr-Chr4332 3917 15541 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4332g00003 222 388 Eukaryotic Initiation Factors Gene Family AT4G34110 29.586 2.77e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4332g00003 K13091 - gmx:100789839 806.979