Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4318g00004 ATGGCGGAAGAGAGATTCACCGGCGTCGTGCAGTGGTTCAACAATGGCAAGGGCTTCGGCTTCATCAAGCCCGACGACGGTGGCGAGGATCTCTTCGTGCACCAGTCCTCCATCAGATCCGACGGTTACCGCACCCTCCTCGAAGGCGATCGCGTCGAGTTCGCCATCGCCACCGGCGAAAACGACAAGACCAAGGCCGTCGACGTCACCGGCATCGACGGCGCTCCTCTCCAGCCCCGCGCCGCTGCAGGCAACCGCGGCGCCGGCTTCGGATTCAGCGGCAGGCGCAATGGTGCCGGCGCGGGCGGTGCCGCGTGCTACCAGTGCGGCGATTTCGGCCACCTCGCCAGGGATTGCAACCGGAGCAGCAATTCTGGCGGCGGCGGAGGCGGCGGCTGTTTCAATTGCGGCGGCTTCGGTCACCTCGCCAGGGATTGCATGCGCGGCGGCAACAGCGGCGGCGGCGGAGTTGGCGGTGGCGGAGGCGGATCTTGCTTCAGGTGTGGCGGATTCGGACACATGGCGAGGGATTGCGCCACCGCTAAGGGTGGCATCGGCAGTGGCGGTGGCGGCGGCGGAGGCGGATGTTTTCGGTGTGGCGAGGTTGGTCATTTGGCTAGGGATTGCGGCGTTGAAGGAGGGAGGTACGGTGGCGGTAACAGTGGTGGCGGTGGCGGTGGTCCGAAGAGCACGTGCTTTAACTGTGGGAAGCCTGGGCACTTTGCGAGGGAGTGCGTCGAGGCTTCTGGGTGA 753 0.66 MAEERFTGVVQWFNNGKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDRVEFAIATGENDKTKAVDVTGIDGAPLQPRAAAGNRGAGFGFSGRRNGAGAGGAACYQCGDFGHLARDCNRSSNSGGGGGGGCFNCGGFGHLARDCMRGGNSGGGGVGGGGGGSCFRCGGFGHMARDCATAKGGIGSGGGGGGGGCFRCGEVGHLARDCGVEGGRYGGGNSGGGGGGPKSTCFNCGKPGHFARECVEASG 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4318g00004 250 Gene3D - 227 250 - -
Mupr4318g00004 250 Gene3D - 192 226 - -
Mupr4318g00004 250 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Mupr4318g00004 250 Gene3D - 83 125 - -
Mupr4318g00004 250 ProSiteProfiles Zinc finger CCHC-type profile. 232 245 IPR001878 GO:0003676|GO:0008270
Mupr4318g00004 250 PANTHER COLD SHOCK DOMAIN PROTEIN 2 183 247 - -
Mupr4318g00004 250 SMART c2hcfinal6 132 148 IPR001878 GO:0003676|GO:0008270
Mupr4318g00004 250 SMART c2hcfinal6 195 211 IPR001878 GO:0003676|GO:0008270
Mupr4318g00004 250 SMART c2hcfinal6 105 121 IPR001878 GO:0003676|GO:0008270
Mupr4318g00004 250 SMART c2hcfinal6 231 247 IPR001878 GO:0003676|GO:0008270
Mupr4318g00004 250 SMART c2hcfinal6 164 180 IPR001878 GO:0003676|GO:0008270
Mupr4318g00004 250 SMART csp_8 7 72 IPR011129 GO:0003676
Mupr4318g00004 250 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Mupr4318g00004 250 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Mupr4318g00004 250 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Mupr4318g00004 250 PRINTS Eggshell protein signature 98 109 - -
Mupr4318g00004 250 PRINTS Eggshell protein signature 158 173 - -
Mupr4318g00004 250 PRINTS Eggshell protein signature 223 241 - -
Mupr4318g00004 250 PRINTS Eggshell protein signature 185 195 - -
Mupr4318g00004 250 ProSiteProfiles Zinc finger CCHC-type profile. 106 119 IPR001878 GO:0003676|GO:0008270
Mupr4318g00004 250 SUPERFAMILY Retrovirus zinc finger-like domains 105 147 IPR036875 GO:0003676|GO:0008270
Mupr4318g00004 250 SUPERFAMILY Retrovirus zinc finger-like domains 214 246 IPR036875 GO:0003676|GO:0008270
Mupr4318g00004 250 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Mupr4318g00004 250 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Mupr4318g00004 250 SUPERFAMILY Retrovirus zinc finger-like domains 158 211 IPR036875 GO:0003676|GO:0008270
Mupr4318g00004 250 ProSiteProfiles Zinc finger CCHC-type profile. 196 209 IPR001878 GO:0003676|GO:0008270
Mupr4318g00004 250 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Mupr4318g00004 250 ProSiteProfiles Zinc finger CCHC-type profile. 133 146 IPR001878 GO:0003676|GO:0008270
Mupr4318g00004 250 Gene3D - 1 82 IPR012340 -
Mupr4318g00004 250 ProSiteProfiles Zinc finger CCHC-type profile. 165 178 IPR001878 GO:0003676|GO:0008270
Mupr4318g00004 250 Pfam Zinc knuckle 164 179 IPR001878 GO:0003676|GO:0008270
Mupr4318g00004 250 Pfam Zinc knuckle 132 147 IPR001878 GO:0003676|GO:0008270
Mupr4318g00004 250 Pfam Zinc knuckle 195 209 IPR001878 GO:0003676|GO:0008270
Mupr4318g00004 250 Pfam Zinc knuckle 231 245 IPR001878 GO:0003676|GO:0008270
Mupr4318g00004 250 Pfam Zinc knuckle 105 119 IPR001878 GO:0003676|GO:0008270
Mupr4318g00004 250 Gene3D - 126 188 - -
Mupr4318g00004 250 SUPERFAMILY Nucleic acid-binding proteins 4 74 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4318g00004 Mupr-Chr4318 35534 36286 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Mupr4318g00004 CSD 1.2e-24 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4318g00004 K09250 - gmx:106796585 360.918