Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4317g00006 ATGCTTCCCATCACCTGCATTCTTTTAATGTGCCTTCTCAGTTCTTTCTCTCCCCCAATCAAAGCCCTCCTCAACCTCACCTTACCCCACCAACACCCTCACCCGGAAAACGTCGTTAACGAACTTCAACGGAAGGTGAATGCCTCACTATGGAGAAGACAAATGCTGGCGAAGGACCAAGCCACGTGTCTGACGGGAAACCCGATCGACGACTGCTGGCGGTGCGACCCGAACTGGGCGGCGAACCGGCAGAAGCTAGCAGACTGCGGCATCGGGTTCGGGCGAGACGCTCTGGGCGGGAAGGGCGGGCAGATCTACGTGGTGACGGATTCGTCGGACCGGGACCCAGCGAACCCCGTCCCGGGCACGCTCCGGCACGCCGTGATACAAGACGAGCCGCTCTGGATCGTCTTCGCCGCCGACATGACCATAACCCTAAAGCACGAGCTGATCTTCAACAGCTACAAGACTGTTGACGGACGCGGCGCCAACGTCCAAGTCACCGGGCACGGCTGCATCACGCTGCAGTACGTGTCCAACGTCATCCTCCACAACATCCACGTCCACCACTGCACACCCTCCGGGAATACTAACATACGCGCCAGCCCCACGCACGTAGGGTGGAGGGGCAAATCGGACGGCGATGGGATTTCCATCTTCGGGTCCCGGAAGATCTGGATCGACCATTGCTCCCTTTCTTACTGTACGGACGGCTTGATCGACGCCATCATGGGGTCCACAGGTATCACCATCTCGAACAACCACTTCGCCCACCACGACGAGGTCATGCTCTTGGGCCACAACGATAAGTACTTGCCCGACAGAGGCATGCAAGTTACCATTGCCTTTAATCACTTTGGGGAGGGTTTGGTGCAGCGCATGCCACGCTGCAGGCTCGGATACATCCACGTCGTCAACAATGATTTCACCCAGTGGGAGATGTATGCCATCGGTGGTAGCGCTAACCCCACCATTAACAGCCAGGGCAACCGTTACACCGCCCCCGCCGACCCTAATGCTAAAGAGGTAACAAAGCGCGTGGACACCGACGATAGAGAGTGGAGTGGTTGGAATTGGAGGACGGAAGGGGACATAATGGTAAATGGAGCCTTCTTTGTTCCCTCGGGGGCAGGACTCAGTGCTCAGTACGCGGAGGCCACCAGTGTGCAACCCAAATCCGCCGTGCAAATTGACCAGCTCACCATGTACTCCGGTGTCTTCGGTGATCCCAGGGATAATGGGGATTTATATCCCGGTTTCAACGGTGGTGGGACCGTGACCGGAGCCACGAGCAAAGGCAACAATGCGGGGTCAAGCAGCGACGATGGGGACTTCTTTGGGATGATATTCAGAGGTAGCAGCAGCCAAGCACCACCACCATCACTCTCTTGGTCCATTCTATTTGTTTCAACCTTTTTGTCTCTTTTCATTTTGGACGCTATCACCAACCATGCCATTCTATTTTCATTACTATGA 1476 0.5603 MLPITCILLMCLLSSFSPPIKALLNLTLPHQHPHPENVVNELQRKVNASLWRRQMLAKDQATCLTGNPIDDCWRCDPNWAANRQKLADCGIGFGRDALGGKGGQIYVVTDSSDRDPANPVPGTLRHAVIQDEPLWIVFAADMTITLKHELIFNSYKTVDGRGANVQVTGHGCITLQYVSNVILHNIHVHHCTPSGNTNIRASPTHVGWRGKSDGDGISIFGSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNNHFAHHDEVMLLGHNDKYLPDRGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPADPNAKEVTKRVDTDDREWSGWNWRTEGDIMVNGAFFVPSGAGLSAQYAEATSVQPKSAVQIDQLTMYSGVFGDPRDNGDLYPGFNGGGTVTGATSKGNNAGSSSDDGDFFGMIFRGSSSQAPPPSLSWSILFVSTFLSLFILDAITNHAILFSLL 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4317g00006 491 Gene3D - 66 408 IPR012334 -
Mupr4317g00006 491 Pfam Pectate lyase 148 330 IPR002022 -
Mupr4317g00006 491 FunFam Pectate lyase 66 408 - -
Mupr4317g00006 491 PANTHER PECTATE LYASE 18-RELATED 29 407 IPR045032 GO:0030570
Mupr4317g00006 491 PRINTS Pollen allergen Amb family signature 357 381 IPR018082 -
Mupr4317g00006 491 PRINTS Pollen allergen Amb family signature 89 106 IPR018082 -
Mupr4317g00006 491 PRINTS Pollen allergen Amb family signature 213 234 IPR018082 -
Mupr4317g00006 491 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Mupr4317g00006 491 PRINTS Pollen allergen Amb family signature 113 138 IPR018082 -
Mupr4317g00006 491 PRINTS Pollen allergen Amb family signature 149 165 IPR018082 -
Mupr4317g00006 491 PRINTS Pollen allergen Amb family signature 293 312 IPR018082 -
Mupr4317g00006 491 PRINTS Pollen allergen Amb family signature 386 409 IPR018082 -
Mupr4317g00006 491 SMART amb_all 141 338 IPR002022 -
Mupr4317g00006 491 SUPERFAMILY Pectin lyase-like 57 382 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4317g00006 Mupr-Chr4317 40168 44513 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4317g00006 1 416 Polysaccharide Lyase AT3G53190 70.379 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4317g00006 K01728 - gmx:100808438 941.028