Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4302g00004 ATGGCAGAATCGTGCCTTCTGTCTCTCCCTTCTCTTTTGTACGCCAAAACCAAATCCTCTTGTCTCTCAATTCCCTCTAAGCCCTTCAACCTGCAATTTCCACGCTCCATATCTTCGCCCTTTTCCCTCAGCACCCACCACTCCTCTCTCCTCACATTCGTGGCCCAGACATCGGATTGGGCCCAAGAAGAAGAAGAAGAAGAAGGCCCATGGGAGAACCAAAGCGACTCCACCTGGGGAGCTGGAGAAGGTGATATCGATGGCCAAGAGGGTTTCGCTCAGCCAACTGAAGAAATTAAGGTCTTTGTCGGGAACTTGCCTTTCGACATTGACAGTGAGAATTTGGCCTCGCTTTTCAAACAGGCTGGCACCGTTGAGGTTGCCGAGGTCAGTGCCTCCTCTTGTCTTTGCTCTTCTCTTTCTGGTTTCGGTGTTTCATTTCAATGTCGCTATGCTTTCAGGGTCACTGACCGGAGTCGCGGCTTTGGATTTGTTACCATGAGTACTATTGAAGAGGTTGAAAAGGCTGTCCAGATGTTCAGTGGCTATGAACTAAATGGAAGACCGTTAACTGTTAATAAGGCTGCTCCAAGAGGAGCACAGCCTGAACGTCCGCCACGCACGCCACGAGCCTTCGGTAATGGTTTAAGAGTCTATGTTGGTAACTTGCCATGGGATGTTGACAGTGGTCGTCTGGAGCAAATTTTCAGTGAACATGGTAAGGTTGAGGATGCTCGGGTGGTCTATGACAGAGAGACTGGTCGATCACGTGGCTTTGGCTTTGTCACAATGTCCAGTGAGACTGATATGAATGATGCAATTGCTGCTCTTGATGGTCAGAGCTTGGATGGGAGGGCAATAAGAGTGAATGTTGCAGAGGAAAAGCCCAGACGCAGCTCCTTTTGA 906 0.4945 MAESCLLSLPSLLYAKTKSSCLSIPSKPFNLQFPRSISSPFSLSTHHSSLLTFVAQTSDWAQEEEEEEGPWENQSDSTWGAGEGDIDGQEGFAQPTEEIKVFVGNLPFDIDSENLASLFKQAGTVEVAEVSASSCLCSSLSGFGVSFQCRYAFRVTDRSRGFGFVTMSTIEEVEKAVQMFSGYELNGRPLTVNKAAPRGAQPERPPRTPRAFGNGLRVYVGNLPWDVDSGRLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAALDGQSLDGRAIRVNVAEEKPRRSSF 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4302g00004 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 294 IPR000504 GO:0003723
Mupr4302g00004 301 Gene3D - 54 201 IPR012677 -
Mupr4302g00004 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 197 IPR000504 GO:0003723
Mupr4302g00004 301 SUPERFAMILY RNA-binding domain, RBD 214 299 IPR035979 GO:0003676
Mupr4302g00004 301 SUPERFAMILY RNA-binding domain, RBD 96 214 IPR035979 GO:0003676
Mupr4302g00004 301 CDD RRM2_NsCP33_like 217 292 - -
Mupr4302g00004 301 FunFam 31 kDa ribonucleoprotein, chloroplastic 203 300 - -
Mupr4302g00004 301 PANTHER OS02G0815200 PROTEIN 34 297 - -
Mupr4302g00004 301 Gene3D - 202 300 IPR012677 -
Mupr4302g00004 301 MobiDBLite consensus disorder prediction 61 90 - -
Mupr4302g00004 301 SMART rrm1_1 217 290 IPR000504 GO:0003723
Mupr4302g00004 301 SMART rrm1_1 100 193 IPR000504 GO:0003723
Mupr4302g00004 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 131 IPR000504 GO:0003723
Mupr4302g00004 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 218 288 IPR000504 GO:0003723
Mupr4302g00004 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 144 190 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4302g00004 Mupr-Chr4302 37000 39145 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4302g00004 87 298 Eukaryotic Initiation Factors Gene Family AT3G16380 31.222 1.29e-19 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4302g00004 - - gmx:100811487 408.297