LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr4301g00005	TTGAGTGCCGACGCAACAACGTCTCTCGCACTCGCATCACTCTCCACTCTCACTCTCACACTTACAGGGAAAGCGAGAGAGAGATCATCAATGCAAGACATTTTCGGATCAGTTCGTCGATCACTCGTATTCCGCGGTTCGCCGGAGAACGAAGACGCCTCTCTCGGAGTCGGAGGAAGCCTCGTCGATAAGATCAGTTATTGTATCCGAAGTTCCAGAGTCTTCTCCAAACCCTCGCCGCCGTCGCCGTCCATTCCTAAGGACGCTGCGCCTCCGATCCGATGGCGGAAAGGCGAGTTGATCGGTTGCGGCGCCTTTGGCCAAGTCTACGTTGGAATGAATCTTGATTCCGGAGAGCTTCTAGCGGTTAAACAGGTTTTGATTGCGGCGAGTAGTGCTTCGAAGGAGAAGGCACAGGCTCACATAAAAGAGCTTGAGGAAGAAGTTAAATTACTGAAAGACCTTTCTCATCCCAACATTGTTAGATATTTGGGTACAGTCAGAGAAGAGGACACGCTAAATATTCTCCTGGAGTTTGTTCCTGGTGGATCCATATCATCACTATTGGGGAAGTTTGGGGCTTTCCCCGAGGCTGTAATAAGAACTTACACGAAGCAGTTACTACTTGGACTAGAGTACTTGCACAAAAATGGAATCATGCACAGAGACATTAAGGGGGCCAATATTCTTGTAGATAATAAAGGATGCATAAAACTTGCAGACTTTGGGGCATCCAAACAGGTCGTTGAGCTGGCAACCATTTCGGGTGCCAAGTCCATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAAACTGGGCATAGCTTCTCTGCTGACATATGGAGCGTGGGTTGTACTGTGATTGAGATGGCCACTGGAAAGCCTCCCTGGAGTCAGCAGTACCAACAAGAGGTTGCTGTTCTCTTCCATATAGGGACAACTAAGTCTCATCCGCCAATCCCTGATCATCTCTCAGTTGCCGCAAAAGATTTTTTGCTAAAATGTTTGCAGAAGGAACCGATTTTGAGGTCTTCGGCATCAGAACTACTGCAGCATCCCTTTGTTACTGGTGAACATATTAATTCCCTTCCTCTGCCATCTAATGTCTCGGAAAGTTTCGAACCTTCTTCACCATCATGTGCCCCAAATGTTGATTCCTTCCGTTGCTGCTCAACAGTAAATCCTCTGGACTCGGGAAATAAACAGTCGTGGGGAATGAGCAATGATGATGATATGTGTGTGATTGATGACGAAGAGTTCTCGCAGAGTGATGTCAAATACAAATCATTGATGTCAAATAATATTGAGAGTTTCAACCCAATGTCTGATCCCTCTGATGATTGGGGTTGTAAATTTGATGCAAGTCCAGAACTGGAAAATAGAGGGGTTGATTTTGACACCGATGAAAGTTACATGCCACCTGATCAGTCGGGGGTTGATAAGGGGCAGACAGATTTTTCCTTTCCAGGTGTGCCGTCTCTGTCAGAGGAAGATGATGAACTCACAGAGTCAAAAATTAAAGCCTTTTTGGATGAAAAGGCTCTTGAACTGAAAAAACTTCAGACACCTTTATATGAAGAGTTTTACAACAGTTTAAACACATCTTGTTCTCCCAATGTGATTGATAGCGCAAGTGATGATACTGCTGCTCGAAAATACTTAAAATTACCTCCTAAAAGCAGGTCACCAAGCCGGGTACCAATTGGCTCTCCATCTAAAGCAGGTGATAATGCTGGAAGTCCTGGAAGTAATGGCCGGGCCTCATCAACTGTTGGCCATGTAAATAACCATAGTTCACAGGATATACCAGCATCTCCCATTAATGAATGGAAAGGACTGATAGTTGACTCTCAACAGCAGCCCAGTAGCCCAAGTCTAAACTTTTCTGAGAGACAGAGGAAGTGGAAAGAGGAGCTCGACCAGGAGCTTGAGCGAAAGCGAGAAATGATGCGCCAAGCTGGCATGGGCGGAAAGACATCTTCACCAAAGGGTCGAGCTTTACATCGGCAGAGGGAGCGGACAAGATTTGCTTCTCCAAGCAAATAA	2055	0.4603	LSADATTSLALASLSTLTLTLTGKARERSSMQDIFGSVRRSLVFRGSPENEDASLGVGGSLVDKISYCIRSSRVFSKPSPPSPSIPKDAAPPIRWRKGELIGCGAFGQVYVGMNLDSGELLAVKQVLIAASSASKEKAQAHIKELEEEVKLLKDLSHPNIVRYLGTVREEDTLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQEVAVLFHIGTTKSHPPIPDHLSVAAKDFLLKCLQKEPILRSSASELLQHPFVTGEHINSLPLPSNVSESFEPSSPSCAPNVDSFRCCSTVNPLDSGNKQSWGMSNDDDMCVIDDEEFSQSDVKYKSLMSNNIESFNPMSDPSDDWGCKFDASPELENRGVDFDTDESYMPPDQSGVDKGQTDFSFPGVPSLSEEDDELTESKIKAFLDEKALELKKLQTPLYEEFYNSLNTSCSPNVIDSASDDTAARKYLKLPPKSRSPSRVPIGSPSKAGDNAGSPGSNGRASSTVGHVNNHSSQDIPASPINEWKGLIVDSQQQPSSPSLNFSERQRKWKEELDQELERKREMMRQAGMGGKTSSPKGRALHRQRERTRFASPSK	684

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr4301g00005	684	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	219	231	IPR008271	GO:0004672\|GO:0006468
	Mupr4301g00005	684	MobiDBLite	consensus disorder prediction	615	632	-	-
	Mupr4301g00005	684	Coils	Coil	635	655	-	-
	Mupr4301g00005	684	MobiDBLite	consensus disorder prediction	554	684	-	-
	Mupr4301g00005	684	SUPERFAMILY	Protein kinase-like (PK-like)	94	387	IPR011009	-
	Mupr4301g00005	684	Pfam	Protein kinase domain	96	358	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mupr4301g00005	684	Coils	Coil	128	155	-	-
	Mupr4301g00005	684	ProSiteProfiles	Protein kinase domain profile.	95	358	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mupr4301g00005	684	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	74	373	-	-
	Mupr4301g00005	684	FunFam	Mitogen-activated protein kinase kinase kinase 2	94	386	-	-
	Mupr4301g00005	684	Gene3D	Transferase(Phosphotransferase) domain 1	94	382	-	-
	Mupr4301g00005	684	MobiDBLite	consensus disorder prediction	668	684	-	-
	Mupr4301g00005	684	ProSitePatterns	Protein kinases ATP-binding region signature.	101	124	IPR017441	GO:0005524
	Mupr4301g00005	684	MobiDBLite	consensus disorder prediction	633	655	-	-
	Mupr4301g00005	684	FunFam	Serine/threonine-protein kinase STE11	91	185	-	-
	Mupr4301g00005	684	SMART	serkin_6	95	358	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mupr4301g00005	684	MobiDBLite	consensus disorder prediction	579	608	-	-
	Mupr4301g00005	684	CDD	STKc_MAPKKK	94	358	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr4301g00005	Mupr-Chr4301	22971	28396	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr4301g00005	31	684	MAP Kinase Kinase Kinase	AT1G54960	57.453	0.0	701

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Mupr4301g00005		Pkinase	4e-71	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr4301g00005	K20606		-	gmx:100807537	1166.37