Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr429g00006 ATGCAAATCTTTGTCAAGACCTTGACTGGTAAAACCATAACCCTTGAGGTGGAGAGTTCAGATACCATTGATAACGTGAAAGCCAAGATTCAGGACAAGGAGGGTATTCCACCAGATCAGCAGAGGCTTATCTTTGCCGGGAAACAGCTTGAGGATGGAAGAACCCTTGCCGATTACAACATTCAGAAGGAGTCCACTCTTCATTTGGTGCTTCGTTTGAGAGGTGGCATGCAAATTTTTGTGAAGACCTTGACGGGGAAGACCATAACTTTGGAGGTTGAAAGTTCTGATACGATTGATAATGTGAAGGCTAAGATACAGGACAAGGAGGGCATCCCACCAGATCAGCAGAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACCCTTGCTGATTATAATATTCAGAAGGAATCCACTTTGCATTTGGTGTTGCGCCTTCGTGGTGGTATGCAAATATTTGTGAAGACTCTGACAGGGAAGACCATTACCTTGGAGGTAGAAAGCTCTGATACAATTGATAATGTGAAAGCGAAGATCCAGGATAAGGAGGGTATTCCCCCAGACCAGCAGAGGCTTATTTTTGCTGGTAAGCAATTGGAAGATGGTCGTACCTTGGCAGATTACAATATTCAGAAGGAATCCACCCTGCACCTTGTCCTTCGCCTTCGCGCTTTCCATGCAAAGTCTCGGTCATTTTCTGCAAATTTGTATGCATTCATGGTCGTCAAAACTCGTACTTACATGGGAAACAAAAGAGGTAATCAAACACAAGAACCCCCACCTCTTCCAGACAGCGAAGGGAATATCTCATAA 822 0.4477 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRAFHAKSRSFSANLYAFMVVKTRTYMGNKRGNQTQEPPPLPDSEGNIS 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr429g00006 273 ProSitePatterns Ubiquitin domain signature. 179 204 IPR019954 -
Mupr429g00006 273 PANTHER UBIQUITIN 77 154 - -
Mupr429g00006 273 FunFam Polyubiquitin 3 1 76 - -
Mupr429g00006 273 Gene3D - 153 241 - -
Mupr429g00006 273 Gene3D - 1 76 - -
Mupr429g00006 273 Gene3D - 77 152 - -
Mupr429g00006 273 ProSiteProfiles Ubiquitin domain profile. 153 228 IPR000626 GO:0005515
Mupr429g00006 273 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Mupr429g00006 273 PRINTS Ubiquitin signature 11 31 IPR019956 -
Mupr429g00006 273 PRINTS Ubiquitin signature 32 52 IPR019956 -
Mupr429g00006 273 PRINTS Ubiquitin signature 53 74 IPR019956 -
Mupr429g00006 273 FunFam Polyubiquitin 3 77 152 - -
Mupr429g00006 273 CDD Ubl_ubiquitin 1 76 - -
Mupr429g00006 273 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Mupr429g00006 273 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Mupr429g00006 273 CDD Ubl_ubiquitin 77 152 - -
Mupr429g00006 273 CDD Ubl_ubiquitin 153 227 - -
Mupr429g00006 273 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Mupr429g00006 273 SMART ubq_7 1 72 IPR000626 GO:0005515
Mupr429g00006 273 SMART ubq_7 77 148 IPR000626 GO:0005515
Mupr429g00006 273 SMART ubq_7 153 224 IPR000626 GO:0005515
Mupr429g00006 273 SUPERFAMILY Ubiquitin-like 152 226 IPR029071 -
Mupr429g00006 273 FunFam Polyubiquitin 3 153 228 - -
Mupr429g00006 273 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Mupr429g00006 273 Pfam Ubiquitin family 155 226 IPR000626 GO:0005515
Mupr429g00006 273 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Mupr429g00006 273 MobiDBLite consensus disorder prediction 253 273 - -
Mupr429g00006 273 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Mupr429g00006 273 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr429g00006 Mupr-Chr429 27153 29197 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr429g00006 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 5.05e-49 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr429g00006 K08770 - cave:132173958 439.884