Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4297g00001 ATGGGTAGAGGGAGGGTTGAGCTGAAGAGGATAGAGAACAAAATAAACCGCCAAGTTACTTTCTCAAAAAGAAGGAACGGTTTGCTGAAGAAAGCCAAAGAACTTTCGGTGCTGTGTGATGCTGAGGTTGCTCTTGTTATTTTCTCAAGTCGCGGGAAGCTCTCTACCTTTCCAACTGCTACTGCTAGTATTATCAAAACCTATGAACGATATCGAAAGTGCTCTTTACATCGAGATGACAGTGTTGAACTTGAAAGTCAGAGCTGGTACCAAGAAGTGTCAGTGCTAAAAACAAAGTACGAGTCTCTGCAAAGGACACAAAGGCATTTGCTTGGGGAAGATCTAGGACCACTGAACATAAAGGAGCTGCAAAATATTGAGAAGCAACTTGAAAAAGCTTTATTACAAGCTAGGCAAAGGAAGATACAAATTGTGATTGAACAAATAGAAGAGCTTCGCAGAAAGGAACGCCATCTTGGAGACCTGAATAAGCAACTTAGACTCAAGCTTGAAGGTTATGGATTTAATCTCAAAGCTATAGAAAGTTTGTGGAGCTCTACTTCTACTACTGCTGGAGATGGCAGCTTTCCCTTGCAGCCTTCCCAAACCTACAACCCTATGGATTTACAAGCTGAACCTTTCTTGCAAATAGGATCATATAAGCATGCAGAATTATGCGTCCTTTGTAAAAAGCTGAATCTAACATATACTTACTTATGCGACTCTAAGAAAGGTGGTACCAGGTTGCTGAGCCATCCATTGTCCAAAAGAGCATGGCTAGTGAGACTAATTTTACCCAGGGATGGTTTCTTTGATTTAATTTGGGTTCTTAATTCTCATTGTTATCAAGAAAAAAATGTATCTTCCGGACCTGTGTGGGAAGTTTACAGATTTCTAATGCATGGAATACAGATATAG 918 0.4031 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAKELSVLCDAEVALVIFSSRGKLSTFPTATASIIKTYERYRKCSLHRDDSVELESQSWYQEVSVLKTKYESLQRTQRHLLGEDLGPLNIKELQNIEKQLEKALLQARQRKIQIVIEQIEELRRKERHLGDLNKQLRLKLEGYGFNLKAIESLWSSTSTTAGDGSFPLQPSQTYNPMDLQAEPFLQIGSYKHAELCVLCKKLNLTYTYLCDSKKGGTRLLSHPLSKRAWLVRLILPRDGFFDLIWVLNSHCYQEKNVSSGPVWEVYRFLMHGIQI 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4297g00001 305 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mupr4297g00001 305 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Mupr4297g00001 305 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Mupr4297g00001 305 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mupr4297g00001 305 Coils Coil 120 169 - -
Mupr4297g00001 305 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr4297g00001 305 FunFam MADS-box transcription factor MADS-MC 13 87 - -
Mupr4297g00001 305 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mupr4297g00001 305 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Mupr4297g00001 305 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mupr4297g00001 305 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr4297g00001 305 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Mupr4297g00001 305 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mupr4297g00001 305 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mupr4297g00001 305 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4297g00001 Mupr-Chr4297 2595 7276 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4297g00001 1 222 MADS-box Gene Family AT2G45650 59.912 5.79e-86 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mupr4297g00001 K-box 3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4297g00001 K09264 - gmx:100820061 306.605