Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr428g00002 AGGCGCAACAACAGGGAGAAACCAAAGGCGGCGATTATCTCATCCTCCTCCGCGAGAAGAATGGCTCTGGTGGCAAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACCAACGTAGATGGGAAGCAGAAGATAATGTTCGCCCTTACCTCTATCAAAGGTATTGGCAGGCGATTCGCTAACATGGTCTGCAAAAAAGCCGATGTTGACATGAACAAGAGAGCTGGTGAATTGAGTGCTGCCGAGTTGGATAACCTCATGACTGTGGTTGCCAACCCTCGACAATTCAAGATCCCAGATTGGTTTCTGAACAGGAAGAAGGACTACAAGGACGGGAAGTATTCCCAGGTGGTGTCAAATGCACTGGATATGAAGTTGAGGGATGATTTGGAGCGGTTGAAGAAAATCAGGAATCACCGTGGTTTGAGGCACTACTGGGGTCTTCGTGTTAGGGGCCAGCATACTAAGACTACTGGCCGCAGGGGTAAAACTGTTGGTGTCTCTAAGAAGCGTTAA 519 0.4894 RRNNREKPKAAIISSSSARRMALVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANMVCKKADVDMNKRAGELSAAELDNLMTVVANPRQFKIPDWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr428g00002 172 Pfam Ribosomal protein S13/S18 34 162 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mupr428g00002 172 PIRSF RPS13p_RPS13a_RPS18e_RPS13o 15 172 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mupr428g00002 172 ProSitePatterns Ribosomal protein S13 signature. 141 154 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mupr428g00002 172 FunFam 40S ribosomal protein S18 21 100 - -
Mupr428g00002 172 Gene3D 30s ribosomal protein s13, domain 2 112 162 IPR027437 -
Mupr428g00002 172 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 22 172 - -
Mupr428g00002 172 FunFam 40S ribosomal protein S18 112 163 - -
Mupr428g00002 172 SUPERFAMILY S13-like H2TH domain 33 168 IPR010979 GO:0003676
Mupr428g00002 172 Hamap 30S ribosomal protein S13 [rpsM]. 32 172 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mupr428g00002 172 ProSiteProfiles Ribosomal protein S13 family profile. 35 165 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mupr428g00002 172 Gene3D - 21 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr428g00002 Mupr-Chr428 27411 29759 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr428g00002 21 172 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 95.395 9.80e-109 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr428g00002 K02964 - qsu:112019340 299.286