Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4288g00004 GCTTGTGCTGTTATGAAAGTGACTGCAAATGGACAAACAATCTGGGGATTCTTCATCAGCTCATGCTGCTGCAGTTTGTATGTTGTTTCTGTAGGTCCATTTGAGATTTCCTCACTTAATGTTCGAAAAAAGGTGGGAAGCAGTGCATGGGGAATACCACGTGCCACTGATGTGTTCCATGATTCAAGTGATGTTAGCTTGTTTTCTATAGATTTGATCGATTCTGAAAATTATGGTCAACCAGTCGATGATAACTTGCTAACATTAGATAAAGTTCACAAAGAGGATGAGGGAGATAACCCTTTTGACGATTTTGAAACCAATGCAATTGGGAACATGCTTCCCGATGATGAAGAGGAGCTTTTAGCTGGGATTATGGATGATTTTGACTTAAGTAAATTGCCCAGCCAACTGGAGGATCTGGATGAAAATGATCTGTTTGTCAATGGAGGGGGATTTGAGATGGATTTTGAATCCCAAGAGAGCCTTAATATTGGTATGTCCAATATAAGCATATCAGATGTTGCTTCAAATGGTATTGGTCCCTATGCAATCCCGAATGGTGTGGGAACAGTGGCTGGGGAGCATCCCTATGGAGAGCATCCATCAAGGACATTATTTGTTCGAAACATCAACAGTAATGTCGAGGATTCTGAATTACGAATACTATTCGAGCAATATGGGGATATCAGAACTTTGTACACAGCATGCAAGCATAGGGGCTTTGTGATGATATCTTACTACGACATTCGAGCTGCTCGCACTGCCATGCGAAGTTTACAAAACAAGCCCTTGAGACGTAGAAAACTTGATATTCATTTTTCAATTCCTAAGGATAACCCCTCAGAAAAAGATATTAATCAAGGAACCCTTGTAGTGTTCAATTTAGATCCATCAGTATCAAATGACGACCTTCGTCAAATATTTGGGGCTTATGGCGAGGTCAAGGAGATTAGGGAAACACCACATAAGAGACACCATAAATTTATTGAATTTTATGATGTTAGAGCAGCCGAGGCAGCTCTTAAAGCATTAAATCGAAGTGATATTGCTGGGAAACGCATAAAACTTGAACCCAGTCGCCCTGGTGGAGCACGTCGAAACTTGATGCAACAACTGACTCAAGAACTGGATCAAGATGAAGCTCGAACTTTTAGACATCAAGTAGGTTCACCCATGGCAAATTCTCCTCCCGGTAGCTGGGCACAGTTTGGTAGTCCGGTTGAACATAATCCATTAGGTTCTTTTAGCAAGTCCCCTGGTTTGGGTCATGCCAGTCCCATTAATACCAACCATTTGTCTGGATTGACTGCAATTCTTTCCCCACATGCAACAACCTCTACCAAGATTGCACCGATTGGCAAGGACCCTGGAAGGGCTGTAAATCAGATGTTTGCAAACTCCGGATCAACACAAGGAGCAGCTTTTCAGCACTCTAGATCCTTTCCTGAGCAAAATGTAAATGCAAGTCCTAGGCCTATATCTACTTTTGGTGAATCAAGTTCAAGTGCATCAAGTATTGGAACACTGTCCGGTCCTCAATTTCTTTGGGGAAGCCCGAGTCCTTACTCTGAGCATTCAAACACTTCTGCCTGGTCTTCGTCTTCTGTGGGGCTTCCATTTACATCTAGTGTCCAACGGAAGGGTTTCCCATATGCTAGTCATCGCAGTCCTTTTATTGGCTCTCACTCCCATCATCATGTTGGATCTGCTCCTTCTGGCATTCCTCTTGATAGGCATTTTAGCCACTTCTCTGAGTCACCTGAAGCTTCTCTCATGAGCCCACTTGCATTTGGGAATTTAAATCACAGTGATGGAAATTTTATGATGAACATGGGTGCTCGTGCATCTGTAGGAGCTGGTGTTGGCCTCTCGGGAAATACCACTGAAATTAGTTCATCCAATTTCAGAATGATGTTGCTGCCTAGGCATGGTTCCTTGTTCCATGGAAATAGTTCATACTCTGGACCAGGAGCAATGAACATTGAGGGATTAGCTGAACGTGGACGAAGTAGACGTCCTGACAATGGCGGAAACCAAATTGATAGTAAGAAGCTGTACCAGCTTGACCTAGACAAAATCATCAGTGGTGAGGATACAAGGACTACTTTAATGATTAAAAACATTCCTAACAAGTATACATCGAAGATGCTGCTTGCTGCAATTGATGAGAATCACCGGGGTACTTATGACTTCCTCTACTTGCCAATTGACTTTAAGAATAAGTGTAATGTGGGTTATGCTTTTATCAATATGGCGTCTCCTTCACACATCATCCCCTTCTATAAGGCCTTTAATGGGAAAAAGTGGGAGAAGTTCAACAGCGAAAAGGTTGCTTCACTGGCATATGCACGGATACAAGGAAAGGCTGCGCTTGTGATGCATTTCCAGAATTCAAGCTTAATGAATGAGGACAAACGGTGCCGGCCAATTCTCTTCCATTCTGAGGGCCAAGATACTGGTGACCAGGAACATTTTCTATCCAGCAATTTGAATATATGCATTCGTCAACCGGATGGATCTTATTCGGGCGATTTGTTGGAGAGTCCAAAGGGCTATTCGGATCTGAAGCTAGAGAAAGATTAA 2586 0.4277 ACAVMKVTANGQTIWGFFISSCCCSLYVVSVGPFEISSLNVRKKVGSSAWGIPRATDVFHDSSDVSLFSIDLIDSENYGQPVDDNLLTLDKVHKEDEGDNPFDDFETNAIGNMLPDDEEELLAGIMDDFDLSKLPSQLEDLDENDLFVNGGGFEMDFESQESLNIGMSNISISDVASNGIGPYAIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRILFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRSLQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLTQELDQDEARTFRHQVGSPMANSPPGSWAQFGSPVEHNPLGSFSKSPGLGHASPINTNHLSGLTAILSPHATTSTKIAPIGKDPGRAVNQMFANSGSTQGAAFQHSRSFPEQNVNASPRPISTFGESSSSASSIGTLSGPQFLWGSPSPYSEHSNTSAWSSSSVGLPFTSSVQRKGFPYASHRSPFIGSHSHHHVGSAPSGIPLDRHFSHFSESPEASLMSPLAFGNLNHSDGNFMMNMGARASVGAGVGLSGNTTEISSSNFRMMLLPRHGSLFHGNSSYSGPGAMNIEGLAERGRSRRPDNGGNQIDSKKLYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMASPSHIIPFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTGDQEHFLSSNLNICIRQPDGSYSGDLLESPKGYSDLKLEKD 861
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mupr4288g00004 861 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 362 IPR000504 GO:0003723
Mupr4288g00004 861 SUPERFAMILY RNA-binding domain, RBD 201 364 IPR035979 GO:0003676
Mupr4288g00004 861 SUPERFAMILY RNA-binding domain, RBD 703 788 IPR035979 GO:0003676
Mupr4288g00004 861 CDD RRM1_MEI2_like 203 279 IPR034453 -
Mupr4288g00004 861 SMART rrm1_1 703 779 IPR000504 GO:0003723
Mupr4288g00004 861 SMART rrm1_1 205 273 IPR000504 GO:0003723
Mupr4288g00004 861 SMART rrm1_1 290 358 IPR000504 GO:0003723
Mupr4288g00004 861 FunFam MEI2-like protein 5 isoform 2 193 287 - -
Mupr4288g00004 861 Gene3D - 288 385 IPR012677 -
Mupr4288g00004 861 Pfam RNA recognition motif 2 701 797 IPR007201 -
Mupr4288g00004 861 Gene3D - 193 287 IPR012677 -
Mupr4288g00004 861 PANTHER RNA RECOGNITION MOTIF-CONTAINING 106 828 - -
Mupr4288g00004 861 CDD RRM3_MEI2_like 704 789 IPR034454 -
Mupr4288g00004 861 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 204 277 IPR000504 GO:0003723
Mupr4288g00004 861 MobiDBLite consensus disorder prediction 474 505 - -
Mupr4288g00004 861 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 356 IPR000504 GO:0003723
Mupr4288g00004 861 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 206 270 IPR000504 GO:0003723
Mupr4288g00004 861 CDD RRM2_MEI2_like 288 358 - -
Mupr4288g00004 861 FunFam Protein MEI2-like 1 288 383 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mupr4288g00004 Mupr-Chr4288 24022 32578 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4288g00004 199 512 Eukaryotic Initiation Factors Gene Family AT3G16380 23.919 7.07e-11 63.9
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4288g00004 - - gmx:100812324 1537.32