LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr4288g00004	GCTTGTGCTGTTATGAAAGTGACTGCAAATGGACAAACAATCTGGGGATTCTTCATCAGCTCATGCTGCTGCAGTTTGTATGTTGTTTCTGTAGGTCCATTTGAGATTTCCTCACTTAATGTTCGAAAAAAGGTGGGAAGCAGTGCATGGGGAATACCACGTGCCACTGATGTGTTCCATGATTCAAGTGATGTTAGCTTGTTTTCTATAGATTTGATCGATTCTGAAAATTATGGTCAACCAGTCGATGATAACTTGCTAACATTAGATAAAGTTCACAAAGAGGATGAGGGAGATAACCCTTTTGACGATTTTGAAACCAATGCAATTGGGAACATGCTTCCCGATGATGAAGAGGAGCTTTTAGCTGGGATTATGGATGATTTTGACTTAAGTAAATTGCCCAGCCAACTGGAGGATCTGGATGAAAATGATCTGTTTGTCAATGGAGGGGGATTTGAGATGGATTTTGAATCCCAAGAGAGCCTTAATATTGGTATGTCCAATATAAGCATATCAGATGTTGCTTCAAATGGTATTGGTCCCTATGCAATCCCGAATGGTGTGGGAACAGTGGCTGGGGAGCATCCCTATGGAGAGCATCCATCAAGGACATTATTTGTTCGAAACATCAACAGTAATGTCGAGGATTCTGAATTACGAATACTATTCGAGCAATATGGGGATATCAGAACTTTGTACACAGCATGCAAGCATAGGGGCTTTGTGATGATATCTTACTACGACATTCGAGCTGCTCGCACTGCCATGCGAAGTTTACAAAACAAGCCCTTGAGACGTAGAAAACTTGATATTCATTTTTCAATTCCTAAGGATAACCCCTCAGAAAAAGATATTAATCAAGGAACCCTTGTAGTGTTCAATTTAGATCCATCAGTATCAAATGACGACCTTCGTCAAATATTTGGGGCTTATGGCGAGGTCAAGGAGATTAGGGAAACACCACATAAGAGACACCATAAATTTATTGAATTTTATGATGTTAGAGCAGCCGAGGCAGCTCTTAAAGCATTAAATCGAAGTGATATTGCTGGGAAACGCATAAAACTTGAACCCAGTCGCCCTGGTGGAGCACGTCGAAACTTGATGCAACAACTGACTCAAGAACTGGATCAAGATGAAGCTCGAACTTTTAGACATCAAGTAGGTTCACCCATGGCAAATTCTCCTCCCGGTAGCTGGGCACAGTTTGGTAGTCCGGTTGAACATAATCCATTAGGTTCTTTTAGCAAGTCCCCTGGTTTGGGTCATGCCAGTCCCATTAATACCAACCATTTGTCTGGATTGACTGCAATTCTTTCCCCACATGCAACAACCTCTACCAAGATTGCACCGATTGGCAAGGACCCTGGAAGGGCTGTAAATCAGATGTTTGCAAACTCCGGATCAACACAAGGAGCAGCTTTTCAGCACTCTAGATCCTTTCCTGAGCAAAATGTAAATGCAAGTCCTAGGCCTATATCTACTTTTGGTGAATCAAGTTCAAGTGCATCAAGTATTGGAACACTGTCCGGTCCTCAATTTCTTTGGGGAAGCCCGAGTCCTTACTCTGAGCATTCAAACACTTCTGCCTGGTCTTCGTCTTCTGTGGGGCTTCCATTTACATCTAGTGTCCAACGGAAGGGTTTCCCATATGCTAGTCATCGCAGTCCTTTTATTGGCTCTCACTCCCATCATCATGTTGGATCTGCTCCTTCTGGCATTCCTCTTGATAGGCATTTTAGCCACTTCTCTGAGTCACCTGAAGCTTCTCTCATGAGCCCACTTGCATTTGGGAATTTAAATCACAGTGATGGAAATTTTATGATGAACATGGGTGCTCGTGCATCTGTAGGAGCTGGTGTTGGCCTCTCGGGAAATACCACTGAAATTAGTTCATCCAATTTCAGAATGATGTTGCTGCCTAGGCATGGTTCCTTGTTCCATGGAAATAGTTCATACTCTGGACCAGGAGCAATGAACATTGAGGGATTAGCTGAACGTGGACGAAGTAGACGTCCTGACAATGGCGGAAACCAAATTGATAGTAAGAAGCTGTACCAGCTTGACCTAGACAAAATCATCAGTGGTGAGGATACAAGGACTACTTTAATGATTAAAAACATTCCTAACAAGTATACATCGAAGATGCTGCTTGCTGCAATTGATGAGAATCACCGGGGTACTTATGACTTCCTCTACTTGCCAATTGACTTTAAGAATAAGTGTAATGTGGGTTATGCTTTTATCAATATGGCGTCTCCTTCACACATCATCCCCTTCTATAAGGCCTTTAATGGGAAAAAGTGGGAGAAGTTCAACAGCGAAAAGGTTGCTTCACTGGCATATGCACGGATACAAGGAAAGGCTGCGCTTGTGATGCATTTCCAGAATTCAAGCTTAATGAATGAGGACAAACGGTGCCGGCCAATTCTCTTCCATTCTGAGGGCCAAGATACTGGTGACCAGGAACATTTTCTATCCAGCAATTTGAATATATGCATTCGTCAACCGGATGGATCTTATTCGGGCGATTTGTTGGAGAGTCCAAAGGGCTATTCGGATCTGAAGCTAGAGAAAGATTAA	2586	0.4277	ACAVMKVTANGQTIWGFFISSCCCSLYVVSVGPFEISSLNVRKKVGSSAWGIPRATDVFHDSSDVSLFSIDLIDSENYGQPVDDNLLTLDKVHKEDEGDNPFDDFETNAIGNMLPDDEEELLAGIMDDFDLSKLPSQLEDLDENDLFVNGGGFEMDFESQESLNIGMSNISISDVASNGIGPYAIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRILFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRSLQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLTQELDQDEARTFRHQVGSPMANSPPGSWAQFGSPVEHNPLGSFSKSPGLGHASPINTNHLSGLTAILSPHATTSTKIAPIGKDPGRAVNQMFANSGSTQGAAFQHSRSFPEQNVNASPRPISTFGESSSSASSIGTLSGPQFLWGSPSPYSEHSNTSAWSSSSVGLPFTSSVQRKGFPYASHRSPFIGSHSHHHVGSAPSGIPLDRHFSHFSESPEASLMSPLAFGNLNHSDGNFMMNMGARASVGAGVGLSGNTTEISSSNFRMMLLPRHGSLFHGNSSYSGPGAMNIEGLAERGRSRRPDNGGNQIDSKKLYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMASPSHIIPFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTGDQEHFLSSNLNICIRQPDGSYSGDLLESPKGYSDLKLEKD	861

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr4288g00004	861	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	289	362	IPR000504	GO:0003723
	Mupr4288g00004	861	SUPERFAMILY	RNA-binding domain, RBD	201	364	IPR035979	GO:0003676
	Mupr4288g00004	861	SUPERFAMILY	RNA-binding domain, RBD	703	788	IPR035979	GO:0003676
	Mupr4288g00004	861	CDD	RRM1_MEI2_like	203	279	IPR034453	-
	Mupr4288g00004	861	SMART	rrm1_1	703	779	IPR000504	GO:0003723
	Mupr4288g00004	861	SMART	rrm1_1	205	273	IPR000504	GO:0003723
	Mupr4288g00004	861	SMART	rrm1_1	290	358	IPR000504	GO:0003723
	Mupr4288g00004	861	FunFam	MEI2-like protein 5 isoform 2	193	287	-	-
	Mupr4288g00004	861	Gene3D	-	288	385	IPR012677	-
	Mupr4288g00004	861	Pfam	RNA recognition motif 2	701	797	IPR007201	-
	Mupr4288g00004	861	Gene3D	-	193	287	IPR012677	-
	Mupr4288g00004	861	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	106	828	-	-
	Mupr4288g00004	861	CDD	RRM3_MEI2_like	704	789	IPR034454	-
	Mupr4288g00004	861	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	204	277	IPR000504	GO:0003723
	Mupr4288g00004	861	MobiDBLite	consensus disorder prediction	474	505	-	-
	Mupr4288g00004	861	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	291	356	IPR000504	GO:0003723
	Mupr4288g00004	861	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	206	270	IPR000504	GO:0003723
	Mupr4288g00004	861	CDD	RRM2_MEI2_like	288	358	-	-
	Mupr4288g00004	861	FunFam	Protein MEI2-like 1	288	383	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr4288g00004	Mupr-Chr4288	24022	32578	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr4288g00004	199	512	Eukaryotic Initiation Factors Gene Family	AT3G16380	23.919	7.07e-11	63.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr4288g00004	-		-	gmx:100812324	1537.32