Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4268g00015 ATGGGGCCAAACTCTGCGGCGGCCAAACAAGCGGAGAAGCTCAGAATTGACGGCAATACTTACTTCAAGAAAGACCGTTTCGGAGCCGCCATCGACGCTTACACCGAGGCGATTACGCTGTGCCCCAACGTTCCTGTTTATTGGACCAATCGCGCGCTGTGCCATCTCAAGCGCAATGATTGGGAGAGAGTAGAAGAAGATTCTCGGAAAGCAATTCAGTTGGACAGCAAATCGGTTAAG 240 0.5167 MGPNSAAAKQAEKLRIDGNTYFKKDRFGAAIDAYTEAITLCPNVPVYWTNRALCHLKRNDWERVEEDSRKAIQLDSKSVK 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4268g00015 80 Pfam Tetratricopeptide repeat 18 43 IPR019734 GO:0005515
Mupr4268g00015 80 SMART tpr_5 11 44 IPR019734 GO:0005515
Mupr4268g00015 80 SMART tpr_5 45 78 IPR019734 GO:0005515
Mupr4268g00015 80 Gene3D Tetratricopeptide repeat domain 2 80 IPR011990 GO:0005515
Mupr4268g00015 80 SUPERFAMILY TPR-like 10 78 IPR011990 GO:0005515
Mupr4268g00015 80 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Mupr4268g00015 80 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 5 80 IPR045200 GO:0000209|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4268g00015 Mupr-Chr4268 63929 64401 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4268g00015 4 80 U-box Gene Family AT3G07370 70.130 4.39e-34 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4268g00015 K09561 - gmx:106796555 164.851