LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr4254g00006	ATGTCTAAGCCAACATCTTCGTCCTCCTCTTCCTTTGCCTATGAATGGACATATGATGTTTTTCTCAGTTTTCGAGGTGAGGATACTCGCACTGGTTTTACTGGAAACCTTTATCATGCTCTTTGTGAAAAGGGAGTCAACACATTCATGGATGATCAAGAGCTGAGAAAGGGAGAAGAAATCACACCAGCTCTAATGAAGGCAATTCAAGAATCTAGGATTTCCATTGTGATTTTTTCACAAAACTATGCATCATCAACTTTTTGTTTACAAGAACTTGTGAACATCATGGAGTGCTTCAAACACAAGGGCAGGTTGGTTTGGCCTGTTTTTTATCAAGTGGATCCATCTGACGTGCGCCATCAGAAAGGAAGTTATGCAGAAGCACTTGCCAAGCATGAAACAACAATCCATAACAAGGATAAGGTGAAAAAATGGAGGTTAATTTTGGAAGAAGCTGCAAACCTGTCTGGTTGGCATTTCAAACAAGGGTACGAATATGAATTCATTCGAGAGATCATTCAAGAGGTCTCTGAAAGGATCAATCGTATCCCTTTACATGTTGCTAATTACCCAGTCGGCTTAGACTCTCGTTTGCAAAAAGTAGAGGCACTTCTTGATGTTGAGTCAAATAATGAAGTCCACATGGTAGGGATTTATGGAATTGGTGGAATGGGAAAAACAACAATTGCATGTGCAGTATACAATTCCATTGCTGATCAATTTGAAGGTCTCTCTTTTCTTGCCGACATTAGAGAAAATTCAGTGAAGCATGAACTGGTACAACTTCAGGAGACACTTCTTTCTGATATAGTTGGGGAAAAAGACATTAAGTTGGGGAATGTAAAGAAAGGGATTCCAATTATTAAAAGTAGGCTTTGTAAAAAGAAAATTCTTTTGATTTTGGATGATGTTGACAGATTGGAGCAATTGAAAGTACTTGCAGGTGGACTTGATTGGTTTGGTTCTGGCAGCAGAATTATTATCACAACTAGAGATATTCATCTGCTACATGTTTACGGTGTTGAAAGAACCTATGAAGTAGAAGCATTAAATCATAAAGAAGCCCTTGAATTGTTCAGATGGAATGCTTTCAGAAGAAAACAAGTTAATCCTAGTTATCTAGACATTTCAGAGAGATTAATATTGCATTGTAATGGCCTTCCATTATCTCTGGAAATAATAGGTTCTGATTTATTTGGTAAATCAGTGTCAGAATGGAAATCAGCATTAGATGCTTATGAAAGAATTCCTCATGAAAATATTCATCAAATCCTTAGAGTAAGCTATGATGGCTTAAAGGAATTTGAGAAGGAAATATTTTTAGACATGGCTTGCTTCTTTAAAGGATACGAACTAAGAGATGTTGTACACATATTACATGGGGGTCGAGGCTTTGCCCCGGACTATGTTATACAGGTGTTGATTGACAAGTGTCTGATAAAAATTGTTCAATGTCGTGTGAGAATGCATAATCTGATTGAGAACATGGGTAGAGAGATTGTGCGGAAGGAATCACCCTCAAAGCCTGGTGAACGCAGTAGATTATGGTTCTCTAAAGATATTCTTCGTGTTCTCAAAGAGAACAAGGGATCTGATAAAACAGAGATCATCATGCTACACTTGTCCAAGGATAAAGAAGTGCAATGGGATGGAAATGCGTTGAACAAGATGGAAAACCTTAAAATACTGGTGGTAAAAAATGCTTTCTTTTCTAGAGGACCTAATGCTCTCCCTAAAAGTTTAAGAGTGCTAAAATGGTCAGGATATCCTGAATCATCACTGCCTCCTCATTTTGATCCAAAGAAACTTGCCATATTGGACTTGTCTATGAGTTTCTTTTCATTCAAGAATCAACTGATCATGAAATTTAAGTCTTTGACAGAAATGAAGTTAAGTGGATGCAAATTACTACAAGAAGTACCTAACATGTCTGGAGCACCAAATTTGAAGAAACTGTATCTTGACAATTGCAAAAATTTAGTTGAAGTTCATGACTCCGTTGGATTCCTTGATAAACTTGAATTTTTTAATCTTAATTATTGCACCAGTCTTAGGGTTCTTCCTCGTGGCATTAACTTAAATTCTCTTAAAACCATGTCTCTTAGGAATTGCACAAGTCTCGTGAGTTTTCCAGAAATTTTAGGGAAGATGAAAAACTTAAGGTACCTTGATTTGGTAGATAGCGCTATAAGTGGCTTGCCTTTTTCAATTGGAAATCTTGTTGGGCTCACAATCCTGAATCTGAAAGGATGCAATGGGCTACTTGAACTACCGAGTAGTATTTTTATGTTGCCAAACCTTGTGAACTTGAAAGCTGGCCTTTGTAAGGGGCTTTCACAAATACAGAACAACAAAGGTCAAGATCAAGAATCAATGTCTTCAAATGTTAAGGAAGCTTGTTTTGACCATTGTTATCTGACAGATAAATTTCTGGCTGCACTTCTTCCCTTCTTGCACAATGTGACATCCTTATCCCTTAGTTCCACCAATATCACAATCCTTCCATCATCCATCAGTTCTTGTCTCTTTTTGACAGAACTTATTTTGAGTGATTGCAATGAGCTTCGAGAAATCAGAGGCCTGCCACCAAACATAAAGTATCTTTCTGCTGTCAACTCCACATCGTTGACTTTCGAGTCTAAGCAAATGTTACTGAATCAGACACTACATGAGACTGGGGGCAGACATTTCAAATTTCCAGGATCAACTGTCCCGAGTTGGTTGAATCACCATAGCAGGGTTCCATCCCTGCATTTCTGGTTTCGTGACAAGTTCCCAGCAATTATTCTATGTGCTGTTGGAGTTCGCAGTTGGTTCCCTGGCTGCAAGTTTAAGCTGATCATTAATGGTGTGCCACTGTTCCCAGCAATTACTCTATGCCAAGCAATTAGGAATCAGACAAATCACATAATTCTGTCTGATCTGCTGCCCCAATATGTTGCTAATAAATTTGAAACATTACATATTAAGAATGGATGGAACAGTGCTGAGATTTCATTTTTCGGTTATGAAGTAATAACATACATTGAATGGATAGGAGTACATGTACAAGAACAAAAAACAAACATGGAAGATATTCAATTTACAAATCCTGACTTTTCAGTGGGAGAAAAACAATTCCCAAATCAATTTATTACTGCAGATAGAGAAAGAGCGCCACCTAGTTCCCGCACTGGACACATGAAACTACTGCAATGTACAGTGAACTGCCCCAAAACTGCTTTTGAAGCACGAACTGCTTTATTAAGTAAAAAACGAAAACGCAATGATGATTTCAATTGGCGACCTTGTGAAGAGAATATTGTAAAAATAGGATGTAAAGAAGTGCAATGGGATGGAAATGCATTAAAGATAGAAAACCATAAAATACTGATTGTAAAAAATGCACTAATCATCTTCCCAAAACTGACAGCTAATTTTGATCCTAAGAAACTAGCCATACTGGACTTGTCTTTTAGTTCCTTTACATTTGACAATCAACTGATCATGGTGTGTATTATTGCTACCTATCATGAAATTTATTTGGTCTTGAATAGTGTTAAGTTCCAGTTGAAAATTCATAAAATAAACACTCTTATCATTACACCAATCTCAGGGTTCTTCCTCGTGGCATCAACTGAGAGTCTCTTAGAAGACTCTCTATGGAAGAGTGCAAGACTCAAGATGAGAGAACATGAAAAATGTTAA	3690	0.3743	MSKPTSSSSSSFAYEWTYDVFLSFRGEDTRTGFTGNLYHALCEKGVNTFMDDQELRKGEEITPALMKAIQESRISIVIFSQNYASSTFCLQELVNIMECFKHKGRLVWPVFYQVDPSDVRHQKGSYAEALAKHETTIHNKDKVKKWRLILEEAANLSGWHFKQGYEYEFIREIIQEVSERINRIPLHVANYPVGLDSRLQKVEALLDVESNNEVHMVGIYGIGGMGKTTIACAVYNSIADQFEGLSFLADIRENSVKHELVQLQETLLSDIVGEKDIKLGNVKKGIPIIKSRLCKKKILLILDDVDRLEQLKVLAGGLDWFGSGSRIIITTRDIHLLHVYGVERTYEVEALNHKEALELFRWNAFRRKQVNPSYLDISERLILHCNGLPLSLEIIGSDLFGKSVSEWKSALDAYERIPHENIHQILRVSYDGLKEFEKEIFLDMACFFKGYELRDVVHILHGGRGFAPDYVIQVLIDKCLIKIVQCRVRMHNLIENMGREIVRKESPSKPGERSRLWFSKDILRVLKENKGSDKTEIIMLHLSKDKEVQWDGNALNKMENLKILVVKNAFFSRGPNALPKSLRVLKWSGYPESSLPPHFDPKKLAILDLSMSFFSFKNQLIMKFKSLTEMKLSGCKLLQEVPNMSGAPNLKKLYLDNCKNLVEVHDSVGFLDKLEFFNLNYCTSLRVLPRGINLNSLKTMSLRNCTSLVSFPEILGKMKNLRYLDLVDSAISGLPFSIGNLVGLTILNLKGCNGLLELPSSIFMLPNLVNLKAGLCKGLSQIQNNKGQDQESMSSNVKEACFDHCYLTDKFLAALLPFLHNVTSLSLSSTNITILPSSISSCLFLTELILSDCNELREIRGLPPNIKYLSAVNSTSLTFESKQMLLNQTLHETGGRHFKFPGSTVPSWLNHHSRVPSLHFWFRDKFPAIILCAVGVRSWFPGCKFKLIINGVPLFPAITLCQAIRNQTNHIILSDLLPQYVANKFETLHIKNGWNSAEISFFGYEVITYIEWIGVHVQEQKTNMEDIQFTNPDFSVGEKQFPNQFITADRERAPPSSRTGHMKLLQCTVNCPKTAFEARTALLSKKRKRNDDFNWRPCEENIVKIGCKEVQWDGNALKIENHKILIVKNALIIFPKLTANFDPKKLAILDLSFSSFTFDNQLIMVCIIATYHEIYLVLNSVKFQLKIHKINTLIITPISGFFLVASTESLLEDSLWKSARLKMREHEKC	1229

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr4254g00006	1229	FunFam	Disease resistance protein (TIR-NBS-LRR class)	14	183	-	-
	Mupr4254g00006	1229	SUPERFAMILY	L domain-like	535	885	-	-
	Mupr4254g00006	1229	SUPERFAMILY	"Winged helix" DNA-binding domain	421	527	IPR036390	-
	Mupr4254g00006	1229	Gene3D	-	350	434	IPR042197	-
	Mupr4254g00006	1229	Gene3D	Ribonuclease Inhibitor	486	692	IPR032675	-
	Mupr4254g00006	1229	PRINTS	Disease resistance protein signature	385	399	-	-
	Mupr4254g00006	1229	PRINTS	Disease resistance protein signature	292	306	-	-
	Mupr4254g00006	1229	PRINTS	Disease resistance protein signature	216	231	-	-
	Mupr4254g00006	1229	PRINTS	Disease resistance protein signature	692	708	-	-
	Mupr4254g00006	1229	Pfam	NB-ARC domain	199	431	IPR002182	GO:0043531
	Mupr4254g00006	1229	Gene3D	Ribonuclease Inhibitor	693	891	IPR032675	-
	Mupr4254g00006	1229	Gene3D	-	178	343	IPR027417	-
	Mupr4254g00006	1229	ProSiteProfiles	TIR domain profile.	16	181	IPR000157	GO:0007165
	Mupr4254g00006	1229	Gene3D	-	14	177	IPR035897	-
	Mupr4254g00006	1229	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	178	443	IPR027417	-
	Mupr4254g00006	1229	Pfam	TIR domain	18	182	IPR000157	GO:0007165
	Mupr4254g00006	1229	SMART	till_3	17	156	IPR000157	GO:0007165
	Mupr4254g00006	1229	SUPERFAMILY	Toll/Interleukin receptor TIR domain	7	159	IPR035897	-
	Mupr4254g00006	1229	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	18	713	IPR044974	GO:0006952

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr4254g00006	Mupr-Chr4254	15344	20878	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr4254g00006	12	852	WRKY Transcription Factor Family	AT4G12020	30.505	3.66e-87	310

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr4254g00006	-		-	gmx:100814790	1505.73