Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr421g00004 ATGACGACACCATCTTCCTCCTCAGCTTCGCAATCACAATTTGTCTATTCCAACACTTCCTACTTCCCTGTGCCCTTTCATCTACAGCAACCTGCAACCACTCACTATGCTGCACCCTATGTCGCAGCTCCCTCCGTACAAATCCCGGCACCTCCTGTTGTTGGTCCTGTTGCACCAGCACCAGTGGCTGGGGTATACTCCGCTGTGCCGCAATATCAGGCGCAACAGTTATTTGAGAGGGATGCACAGATAATAACACCTGAGGCTCTTGAAAATGTTAAGGCAGCGATTGCGAGCAGTGACGTTGAGCACAAAGCAGATACCAAAAAGAAAGCAGTTCCCCGTAAAGCTGCTGGCCAATCTTGGGAGGATCCTATCCTTGCAGAGTGGCCAGAAGATGATTATCGACTCTTTTGTGGCGATCTTGGTAATGAAGTGAATGATGATGTTCTTTCAAAAGCATTTTCACGATTCCCTTCCTTTAACTTGGCACGAGTTGTCAGAGATAAGCGGACTGGTAAAACAAAAGGTTATGGATTTGTGAGCTTTGCCAATCCTGCTGACCTTGCTGCTGCTCTTAAAGAAATGAATGGTAAGTATGTTGGAAATCGACCGATAAAACTACGCAAGAGTAAGTGGAGGGAGAGGACAGATTATGAAGCACTGGAAAAACAAAAGAATCACATTCAAAAGAAACCTAAATTGCCAAGGAAAGGTGTGCTGCACAAATTAGTTGGGTGTTCTAGGGGTATAACAGGTTTGCTGGAGAGGGAACTGAAGAAGGCAGATGTTGACTGGGGGGTTTGTATAGTGAAGCAGAATGTTCAAGGACTTGTTACTTGGGTGCTTGGTGAAGGATTGTAA 864 0.4572 MTTPSSSSASQSQFVYSNTSYFPVPFHLQQPATTHYAAPYVAAPSVQIPAPPVVGPVAPAPVAGVYSAVPQYQAQQLFERDAQIITPEALENVKAAIASSDVEHKADTKKKAVPRKAAGQSWEDPILAEWPEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNLARVVRDKRTGKTKGYGFVSFANPADLAAALKEMNGKYVGNRPIKLRKSKWRERTDYEALEKQKNHIQKKPKLPRKGVLHKLVGCSRGITGLLERELKKADVDWGVCIVKQNVQGLVTWVLGEGL 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr421g00004 287 FunFam RNA-binding protein 42 70 220 - -
Mupr421g00004 287 Gene3D - 74 209 IPR012677 -
Mupr421g00004 287 SUPERFAMILY RNA-binding domain, RBD 119 215 IPR035979 GO:0003676
Mupr421g00004 287 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 60 224 - -
Mupr421g00004 287 SMART rrm1_1 136 209 IPR000504 GO:0003723
Mupr421g00004 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 137 207 IPR000504 GO:0003723
Mupr421g00004 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 135 213 IPR000504 GO:0003723
Mupr421g00004 287 CDD RRM_RBM42 129 211 IPR034215 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr421g00004 Mupr-Chr421 27519 33080 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr421g00004 137 278 Eukaryotic Initiation Factors Gene Family AT1G71770 25.503 3.52e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr421g00004 K25079 - gmx:100807693 438.343