Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr421g00001 ATGAAGAGAAAGTCTAGCTCGGGGAGGCAAAAGATTCCAATTGAGAAAATACCAAAGAAAAGCCATTTACAAGTTACATTCTCGAAGCGTCGTTCGGGACTCTTCAAAAAGGCTAGTGAGCTTTGCACACTTTGTGGAGTAGAAATTGCAATCATTGTTTTCTCTCCCGCCGACAAGGCCTTCTCGTTTGGCCACCCAGAAGTTGAATCCATAATTGATTGCTACCAAACTCGAAACTCTTCATTAGACTCTAGTAGTCACCAACTTGTTGAGGCTCATCGCAATGCTAATATTCGCAATCTCAACATGCAACTTACCCAAATTATTAATCAGCTAGAGATGGAGAAAAGGCAAGGAGAAGAGCTAGATCGAGCGTGGAAAGCTAGGCAGAGACAGTACTGGTGGGAGATTCCCGTTAATCAACTTGGATTGCATCACTTACAACATTTAATGTTTTCAATGGACGACCTTAAGAAGAATGTTGCAAAATATGCTACCCAAATGTTCATGGACCACACCTCTATTCCTCCACCCATTACTGGGCTTGGGCCCACTGGATTTGGGCCTCCTCAGATTTTCGCCGATGCTAATTCCTCCGCTTTCAGTTTTCGATATTAA 618 0.4304 MKRKSSSGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPADKAFSFGHPEVESIIDCYQTRNSSLDSSSHQLVEAHRNANIRNLNMQLTQIINQLEMEKRQGEELDRAWKARQRQYWWEIPVNQLGLHHLQHLMFSMDDLKKNVAKYATQMFMDHTSIPPPITGLGPTGFGPPQIFADANSSAFSFRY 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr421g00001 205 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 63 IPR002100 GO:0003677|GO:0046983
Mupr421g00001 205 Gene3D - 19 87 IPR036879 GO:0003677|GO:0046983
Mupr421g00001 205 FunFam Agamous-like MADS-box protein AGL62 19 85 - -
Mupr421g00001 205 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
Mupr421g00001 205 PANTHER MADS BOX PROTEIN 9 162 - -
Mupr421g00001 205 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Mupr421g00001 205 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Mupr421g00001 205 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Mupr421g00001 205 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Mupr421g00001 205 Coils Coil 95 122 - -
Mupr421g00001 205 CDD MADS_MEF2_like 8 81 IPR033896 GO:0000977|GO:0045944
Mupr421g00001 205 Gene3D - 88 173 - -
Mupr421g00001 205 SUPERFAMILY SRF-like 8 79 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr421g00001 Mupr-Chr421 1785 2402 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr421g00001 6 200 Type I MADS-box Gene Family AT2G24840 46.377 3.06e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr421g00001 SRF-TF 2.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr421g00001 - - ccaj:109813387 273.478