Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4216g00002 ATGGGCCTCTCAAGTCTCCCAGCACCATCTGAAGGAGTATTGTGTGTCCTTCTGGTGAACACTGTGTTGTCAATTTCCATATTTAAAGGCATTGTTAGGACAATCCTCCACATTGTTGGCATCCATCTTTCATCACCCTCTTCACCGGATCCCTCCCAAACCCCACCGGAGTCATTTGAATTCCATCTCAGTCCCTCTGAGAGTTACATAGAAGAGTTTAGAAACCGGACGCCGACACTCAGGTTCGACAGCGTGTGTTGCTGTAAACAACCTGAGCATGACTGCTCTGTGTGTCTCACTCAGTTTGAACCAGAATCGGAGATAAACCGCCTTTCGTGCGGCCATCTCTTCCATAAAGTTTGCCTAGAGAAGTGGCTGGACTACTGGAACATCACATGCCCACTTTGCAGGACTCCCTTGATGCCTGAAGATGACACACCTTGCTTTCACTGTGGTTGGCAATAA 465 0.4817 MGLSSLPAPSEGVLCVLLVNTVLSISIFKGIVRTILHIVGIHLSSPSSPDPSQTPPESFEFHLSPSESYIEEFRNRTPTLRFDSVCCCKQPEHDCSVCLTQFEPESEINRLSCGHLFHKVCLEKWLDYWNITCPLCRTPLMPEDDTPCFHCGWQ 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4216g00002 154 PANTHER - 1 145 IPR044249 -
Mupr4216g00002 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 146 IPR013083 -
Mupr4216g00002 154 Pfam Ring finger domain 94 137 IPR001841 -
Mupr4216g00002 154 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Mupr4216g00002 154 SMART ring_2 95 136 IPR001841 -
Mupr4216g00002 154 SUPERFAMILY RING/U-box 90 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4216g00002 Mupr-Chr4216 11795 12657 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4216g00002 1 144 C3H Transcription Factor Family AT2G04240 65.584 6.45e-61 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4216g00002 K16285 - gmx:100786803 300.056