Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4202g00001 ATGTCTTCGGGGACATCCTCGTACTGGTGCTACAGCTGCAGTCGCTTCGTGCGCGTGTGGCGCCAGGATGCCGTTGTTTGCCCCGATTGCAACGGCGGATTCATCGAGGAGATCGAACACCCCGCCCGCTCCGTCCACGTCGACGCTCGCCGCCGCCGCTTCCCCGCCGCCGCCATGTACATGATTGGCCAACGCCCCGCCTCCGACCAGACCTCCCGCCCTACCCTCCGCCGCACCCGCCGCAACGGCGGCGACCGGTCTCCGTTCAACCCGGTGATCGTCCTCCGCGGCGCCGCAGAGGACGCCGGTGAGAGTCGTGGTTTTGAGCTGTTCTACGACGACGGTGCCGGTTCTGGTCTGAGACCCTTACCTCCGAGCATGTCAGAGTTTCTTCTCGGATCTGGATTCGATAGGCTTCTTGAGCAGCTTTCTCAGATTGAGATCAACGGTATTGGGAGGTACGAACACCCTCCTGCGTCAAAAGCAGCCATTGATTCATTACCAACGATTGAAATCAACGACACTCATTTAGCCATGGAATCACACTGCGCGGTTTGCAAGGAAGCTTTTGAGTTAGGCACTGCGGTTAGAGAAATGCCATGTAAGCACATATACCACCCTGAATGCATATTACCCTGGCTCGCACTTCATAATTCATGCCCCGTTTGTCGGCACGAGTTACCTGCGGATTCCCCAAATCCAAATCCAAATCTAAATCCAAATCCAAATCCAAATCCAAATCCGGCCCAGAATGTTGGTTTAAACGAGGAAGAGAACGTGGGGTTGACTATTTGGAGGTTGCCGGGTGGAGGATTTGCTGTGGGGAGATTCTCCGGTGGGAGAAGAGGCGCGGAGAGAGAGCTTCCTGTGGTTTACACTGAAATGGATGGTGGTTTTAACAATGGAGGTGAACCTAGGAGGATTTCTTGGTCTTCTAGAGGGAATAGAGGGAGGGAGAGTGGGGGTTTGAACCGCTTTTTCCGCAATTTGTTTGGTTGCTTCAGAGGTGGGGTTGGAAGTGCTGCTACTACTCAGCGTTCTGCTTCTAGTAGAGAGTCCATGAGGGCAAGTTCCTCTCGTTCTAGTATGGATCCCTCTCCTCGTTCCCGCAGGACTTGGTCTATGGATGCAATTCTGGGTGAAAAGAACATGAGATTCGGGAGCTCCAAATTCTAA 1176 0.5408 MSSGTSSYWCYSCSRFVRVWRQDAVVCPDCNGGFIEEIEHPARSVHVDARRRRFPAAAMYMIGQRPASDQTSRPTLRRTRRNGGDRSPFNPVIVLRGAAEDAGESRGFELFYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGIGRYEHPPASKAAIDSLPTIEINDTHLAMESHCAVCKEAFELGTAVREMPCKHIYHPECILPWLALHNSCPVCRHELPADSPNPNPNLNPNPNPNPNPAQNVGLNEEENVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSSRGNRGRESGGLNRFFRNLFGCFRGGVGSAATTQRSASSRESMRASSSRSSMDPSPRSRRTWSMDAILGEKNMRFGSSKF 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4202g00001 391 ProSiteProfiles Zinc finger RING-type profile. 183 224 IPR001841 -
Mupr4202g00001 391 MobiDBLite consensus disorder prediction 301 321 - -
Mupr4202g00001 391 CDD RING-H2_RNF126-like 183 224 - -
Mupr4202g00001 391 MobiDBLite consensus disorder prediction 231 253 - -
Mupr4202g00001 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 230 IPR013083 -
Mupr4202g00001 391 MobiDBLite consensus disorder prediction 340 369 - -
Mupr4202g00001 391 FunFam E3 ubiquitin-protein ligase RING1-like 145 230 - -
Mupr4202g00001 391 SUPERFAMILY RING/U-box 163 237 - -
Mupr4202g00001 391 MobiDBLite consensus disorder prediction 233 247 - -
Mupr4202g00001 391 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 87 228 - -
Mupr4202g00001 391 MobiDBLite consensus disorder prediction 64 88 - -
Mupr4202g00001 391 SMART ring_2 183 223 IPR001841 -
Mupr4202g00001 391 Pfam Ring finger domain 182 224 IPR001841 -
Mupr4202g00001 391 Pfam zinc-ribbon 7 38 IPR039525 GO:0061630
Mupr4202g00001 391 Pfam Protein of unknown function (DUF1117) 260 362 IPR010543 -
Mupr4202g00001 391 MobiDBLite consensus disorder prediction 340 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4202g00001 Mupr-Chr4202 10993 12923 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4202g00001 122 233 C3H Transcription Factor Family AT5G01980 41.071 3.64e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4202g00001 K11982 - gmx:100784364 611.298