Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4188g00002 ATGGGGACTCCCGAATTCCCTGATCTCGGCAAGCATTGTTCTGTTTCCGATTGCAGGCAGATTGATTTCTTGCCCTTCACATGCGATCGCTGTGATCAGGTATATTGTTTGGAGCACCGAGGTTATATCAAACATCAGTGCACAAAGCCCAACAAACTAGATGTGACTGTTGTGATATGTCCCCTTTGTGCGAAAGGAGTTCGCCTGGTTCCAGATCAAGACCCGAACATAACTTGGGACAATCACGTTAACGTTGATTGCGACCCATCAAACTACGAGAAAGTGACAAAGAAGAGAAGATGCCCCGCCCCAGGATGCAAAGAGGTTTTGGTATTCTCCAACACAGTGAAATGCAGGGACTGCTTGGAAGACCATTGCTTGAAGCACCGATTTAGCACCGATCACAAGTGTTCGGGTCCCAGAAAGTTGGAGACAAGTTTCTCATTCATGGGTTTTTTGAACAGGAGTAGAAAAGAGGAGTCAAAGCCCAATTTAGCTTCAACAACGTCATCTAAGTGGAGTACAAGCTTCCTAAACGTGGCTTCTAATATTCGCGCATCGGCTGAAGCGGGCATGACGAAATTGGGCGGTGAAATAAACCAAGCTTGGCAGGCAGCTAGAGATGGGGTGGGACAGAGCAGTGGCAGTGCTAGTAAAAATGGTGAAGGGGAGCAATGCCCTCAGTGTGGAGAAAAGTTTCCCTCTGTGAATGCTTTGGTGGATCATGTGCACAAGCTTCATGAAAAGAATGGGAACCAAATAGGGGTCAAGAAAGTCACCATTGATGCGTGTCCCAAGTGTAGTAAGGGATTTCTGGACCCGGTGTCCCTTGTGCAGCATGTTGAGAGGGATCATGGAGGTGGTTCTGGAGCCTAG 876 0.4783 MGTPEFPDLGKHCSVSDCRQIDFLPFTCDRCDQVYCLEHRGYIKHQCTKPNKLDVTVVICPLCAKGVRLVPDQDPNITWDNHVNVDCDPSNYEKVTKKRRCPAPGCKEVLVFSNTVKCRDCLEDHCLKHRFSTDHKCSGPRKLETSFSFMGFLNRSRKEESKPNLASTTSSKWSTSFLNVASNIRASAEAGMTKLGGEINQAWQAARDGVGQSSGSASKNGEGEQCPQCGEKFPSVNALVDHVHKLHEKNGNQIGVKKVTIDACPKCSKGFLDPVSLVQHVERDHGGGSGA 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4188g00002 291 Gene3D Classic Zinc Finger 200 289 - -
Mupr4188g00002 291 Gene3D - 2 58 IPR035896 -
Mupr4188g00002 291 Gene3D - 86 169 IPR035896 -
Mupr4188g00002 291 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Mupr4188g00002 291 SUPERFAMILY AN1-like Zinc finger 54 143 IPR035896 -
Mupr4188g00002 291 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Mupr4188g00002 291 SMART c2h2final6 262 285 IPR013087 -
Mupr4188g00002 291 SMART c2h2final6 224 247 IPR013087 -
Mupr4188g00002 291 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 254 - -
Mupr4188g00002 291 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270
Mupr4188g00002 291 Pfam AN1-like Zinc finger 101 140 IPR000058 GO:0008270
Mupr4188g00002 291 ProSitePatterns Zinc finger C2H2 type domain signature. 264 285 IPR013087 -
Mupr4188g00002 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 224 252 IPR013087 -
Mupr4188g00002 291 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Mupr4188g00002 291 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Mupr4188g00002 291 MobiDBLite consensus disorder prediction 207 223 - -
Mupr4188g00002 291 MobiDBLite consensus disorder prediction 207 226 - -
Mupr4188g00002 291 ProSitePatterns Zinc finger C2H2 type domain signature. 226 247 IPR013087 -
Mupr4188g00002 291 SUPERFAMILY AN1-like Zinc finger 6 52 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4188g00002 Mupr-Chr4188 23759 25548 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4188g00002 1 291 C2H2 Transcription Factor Family AT2G41835 61.017 1.75e-117 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mupr4188g00002 zf-AN1 2.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4188g00002 - - gmx:100790226 520.776