LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr4170g00001	TTTAAGGATTGGAAGTCACTCTCATCTTCAAGTATTGAGCACAATGATTCTACTAGTGACGGATTTCACAAAAGAAAACTTCAACCAAGCATAAGTTCTGCAAGTGATGATGGATCAACAACAAAACTATATTGGAGGAACCATGTTCTTGATCCACAGGGGACAACTCTTCAGAAGTGGAACAAAATTTTTGTCATCACATGTGTGATGGCAATCTCTGTGGACCCTCTTTTCTTTTACATCCCAGTGATTGATGACAAGAAAAAATGCCTTGATTTGGATGGAGCACTGAAGATTACTGCTAGTGTTCTCCGCACATTCTTTGATCTTTTCTACATTCTTCACATCATCTTTCAGTTTCGGACTGGGTTTATAGCACCTTCCTCTCGTGTGTTTGGGAGGGGTGAGCTAGTTGATGATCCTCGTGCCATAGTGATGAAATACTTGGGTTCTTACTTCATCATTGACATTCTATCAATCATTCCACTTCCCCAGATGGTCATTTTAGCTATCATGCCAATCCCAAAATGCTCATCTCCTTATGTGGGAAAGGATTTGTTGAAGTATATGATAATAGCCCAGTACGTGCCAAGACTTTTGCGGATCTACCCGTTATTCAGAGAAGTAACAAGCACTTCTGGCATATTGACTGAGACAGCATGGGCTGGAGCTGCTTACAATCTTTGTCTCTACATGCTAGCAAGTCATCACCTCATCTATGTTCCTAATTATCATGCTAAGTTTTATGATATGACCATCAAGTACATGTGGCATATATACCAGGTTGTTGGAGCATTCTGGTATCTGTTTTCAGTAGAGTCAAGATTACGGTGCTGGCGCAGGCAGTTGAAGAATACTATGTTCTTTCATGAATCCTTCCTTAGCTGTGGACATGAGAATCCTACTGTTCTGTCACTTCTCAATTATTCTTGCCCTTTCAATGATCCAGCAAGCATCGAAGACCTGGAAACTTTCAATTTTGGAATGTTCATAGAAGCTCTAAAGGCTCGCGTGGTAGAATCAGATATAGATTTTCATCACAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAGTGTAAGGTTGGTAAATAATCTTGACAAGTTCCTATTTTCTGTTGGGCAAGGTCTACAGACAAGTACTTATGTTGGGGAGATCATCTTTGCTATCTTCATTGCTGTCTTTGGATTGGTAATTCTTGGCCAGGACTATGAGATGAGATCATATATTGGTGTTATTACTTACACCTCCCTAAAATATCTACAATCTACCACTGTCAGAGTTGAAGAGATGAGAATCAAAAGGAGGGATGCAGAACTGTGGATGTCACACCGGATGCTACCTGATTTCCTAAAGGAGAGAATTAGACGGTATGAGCAATACAAATGGCAAGAAAATAGAGGTGTTGAGGAGGAGACATTAATTCGCAACCTCCCTAAAGATCTCAGAAGGGACATAAAGCGTCATCTTTGCTTAGATCTACTTAAAAAAGTGCCAATGTTTGAGAATATGGATAATCAGTTGTTGGATGCACTGTGTGATAGACTGAAGCCAGTCCTTTACACAGAGAAAAGTTACATAGTTCGTGAAGGGGATCCAGTTGATGAAATGCTGTTCATCATGCGTGGAAAACTTGCCACTGCCACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCATCTGAGCTGAAGGCTGGTGACTTCTGTGGAGAAGAGCTTCTAACATGGGCCCTGGATCCCACCTCCTCCTCAAATCTACCCATTTCAACAAGAACAGTGGAAACTATATCAGAAGTGGAAGCCTTTGCTCTCATGCCTGATGACTTGAAGTGTGTTGCTTCCCAATTTCGTCGTCTTATAAACAGTAAACAACTCCAACACACTTTCAGGCAAGACTTCACATGGAGTATAAAAAAGTATTACATGAAGAAGTTCTATTCCCTGCAATGGAAGACATGGGCTGCATGTTTTATACAAGCAGCTTGGCGCAGATATAGAAAAAAGAAGGCTGAGAGGTCGTTACGTGAAGCAGAAGAAAGGCTACAAGCTTTGGACAATGAGGAAGGGTCTTCACCTAGCTTTGCTGCCACCATATATGCATCAAGGTTTGCATCAAATGCATTGCGCCACTTGCGAAGTGGCAAACGCAACAGAGTGCCACAGACACACAGATTGCAGCCCCTCATGCCTCAGAAGCCAACTGAGCCAGATTTCACAGCTCAGAAAAAC	2229	0.4177	FKDWKSLSSSSIEHNDSTSDGFHKRKLQPSISSASDDGSTTKLYWRNHVLDPQGTTLQKWNKIFVITCVMAISVDPLFFYIPVIDDKKKCLDLDGALKITASVLRTFFDLFYILHIIFQFRTGFIAPSSRVFGRGELVDDPRAIVMKYLGSYFIIDILSIIPLPQMVILAIMPIPKCSSPYVGKDLLKYMIIAQYVPRLLRIYPLFREVTSTSGILTETAWAGAAYNLCLYMLASHHLIYVPNYHAKFYDMTIKYMWHIYQVVGAFWYLFSVESRLRCWRRQLKNTMFFHESFLSCGHENPTVLSLLNYSCPFNDPASIEDLETFNFGMFIEALKARVVESDIDFHHKFFYCFWWGLRSVRLVNNLDKFLFSVGQGLQTSTYVGEIIFAIFIAVFGLVILGQDYEMRSYIGVITYTSLKYLQSTTVRVEEMRIKRRDAELWMSHRMLPDFLKERIRRYEQYKWQENRGVEEETLIRNLPKDLRRDIKRHLCLDLLKKVPMFENMDNQLLDALCDRLKPVLYTEKSYIVREGDPVDEMLFIMRGKLATATTNGGRTGFFNSSELKAGDFCGEELLTWALDPTSSSNLPISTRTVETISEVEAFALMPDDLKCVASQFRRLINSKQLQHTFRQDFTWSIKKYYMKKFYSLQWKTWAACFIQAAWRRYRKKKAERSLREAEERLQALDNEEGSSPSFAATIYASRFASNALRHLRSGKRNRVPQTHRLQPLMPQKPTEPDFTAQKN	743

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr4170g00001	743	ProSiteProfiles	cAMP/cGMP binding motif profile.	500	584	IPR000595	-
	Mupr4170g00001	743	Pfam	Ion transport protein	60	240	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Mupr4170g00001	743	SMART	cnmp_10	500	631	IPR000595	-
	Mupr4170g00001	743	Gene3D	Helix hairpin bin	427	491	-	-
	Mupr4170g00001	743	ProSiteProfiles	IQ motif profile.	651	680	IPR000048	GO:0005515
	Mupr4170g00001	743	FunFam	Cyclic nucleotide-gated ion channel 1	498	616	-	-
	Mupr4170g00001	743	SUPERFAMILY	cAMP-binding domain-like	429	616	IPR018490	-
	Mupr4170g00001	743	Gene3D	Jelly Rolls	498	618	IPR014710	-
	Mupr4170g00001	743	MobiDBLite	consensus disorder prediction	710	743	-	-
	Mupr4170g00001	743	FunFam	Cyclic nucleotide-gated ion channel 1	427	491	-	-
	Mupr4170g00001	743	CDD	CAP_ED	500	620	IPR000595	-
	Mupr4170g00001	743	MobiDBLite	consensus disorder prediction	1	38	-	-
	Mupr4170g00001	743	Coils	Coil	667	687	-	-
	Mupr4170g00001	743	SUPERFAMILY	Voltage-gated potassium channels	51	400	-	-
	Mupr4170g00001	743	MobiDBLite	consensus disorder prediction	24	38	-	-
	Mupr4170g00001	743	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	261	738	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr4170g00001	Mupr-Chr4170	3134	7361	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr4170g00001	21	741	Ion Channels	AT1G01340	57.671	0.0	817

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr4170g00001	K05391		-	gmx:100795201	1142.87