Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4163g00003 ATGGGTGGCAATGGCAAGCACAGGTGGAAATTCTCGTTCCACCGTTCCTCCTCCAAGCTGGACCCGAAGCAACCAAGGAAGGAGTTCACGTGCCCCATTTCCGGGTCCCTAATGTCTGACCCGGTCGTCGTCGCTTCGGGTCAGACCTTTGAACGCGTCGCCGTTCAGGTCTGCAAGGACCTCCACTTCTCCCCAAAGCTCGAAGACGGGACCCGACCCGATTTTTCAACCGTCATCCCCAACCTCGCCATCAAAACCACAATCCTTAACTGGTGCGACGAATCCCGCACCGAACACCCGCGCGCACCGGATTACGCCTCCGTCGAGCGCCAAGTCAGGGAAGCAATGGCGGCGCTGGGGGAAGACGACCGAATTAGGGTTTCGGAAAAGGAGCTTCTCAAGGCGGTGGCGGATAACCCCCCGGTGATTTTCTCCCACGCAGCCACCGAGTTAGGGCCCCGAGTCAACCACTTCAACTCGGGATCTTCCTCGGAGGAATCGGTGATAATTATCCCGCCGAGCCCGGGCACGCCGTTGCCGTTGACGATTCGTCCAACGTGCTTCTCGTCGTCGTCGTCGTCGTGCGAGATCGAAATCGAAAACCCTAACGCGCCAGCGTCGGAGGAGGAAGAAGGAATATTGAAGAAATTGACAAGCGGCGAGGTGTTTGAACAAGAAGAAGGTGTAATCGCGCTGAGAAAGATCACGAGGAACAAAGAGGAGGCTAGGGTTTCACTTTGCACGGCGCGGGTTCTGTTGGCGCTTCGTGGTTTAATCGCGTCGCGATACGGCGTCGTTCAGGTCAACGCGGTGGCATCCTTGGTCAACCTTTCGCTCGAGAAGCAGAACAAGGTGAGGATCGTGAGGTCAGGGTTTGTTCCTTTTCTTATCGACGTTTTGAAGGAGGGATTGGGTGAGTCGCAGGAGCACGCTGCGGGCGCGCTTTTTAGTTTAGCGTTGGACGATGATAACAAAATGGCGATTGGTGTTCTCGGCGCGTTGCATCCTCTGATGCACGCGCTGCGTGCCGAGTCCCAGCGGACTCGGCACGACTCGGCGCTCGCGCTGTACCATCTGACTTTGGTTCAGAGCAACCGAGTCAAATTGGTGAAACTCGGGGTGATCCCCACGCTGCTTTCGATGGTGGTGGCGGGGAACTTGGCGAGCCGGGTGCTGCTGATTCTGTGCAACCTGGCCGTGTGCACGGAGGGGCGCACGGCGATGCTGGACGCGAACGCGGTGGAGTGTTTGGTGGGGCTGCTGAGGGGGAACGAGTTGGACTCGGAGGCGACTCGGGAGAATTGCGTGGCGGCGTTGTACGCGTTGAGTCATAGGAGCTTGAGGTTCAAGGGGTTGGCCAAAGACGCCAGGGTGGTGGAGGTTTTGAAGGAGGTTGAGGAAACGGGAACCGAAAGGGCCAGGGAGAAGGCCAGGAAGGTGTTGCACATGTTGAGGACTGTGGGTGATGGAGACGGTGAAGAGGATGAAGAGTTTTTCGACTCAGCCGGGTTGACTCGGAATCGATACCGAGTTGGTGCTGCCAGGAATCACAACCTCGTCAACACGACTACGTTAACAATTCTTTTGCTGTCCAAGGTCGTCAATGCTGACTCCAACGATGTAGAAAATGTCATTCGACTTGGAGGAGCCTCGTAA 1656 0.5694 MGGNGKHRWKFSFHRSSSKLDPKQPRKEFTCPISGSLMSDPVVVASGQTFERVAVQVCKDLHFSPKLEDGTRPDFSTVIPNLAIKTTILNWCDESRTEHPRAPDYASVERQVREAMAALGEDDRIRVSEKELLKAVADNPPVIFSHAATELGPRVNHFNSGSSSEESVIIIPPSPGTPLPLTIRPTCFSSSSSSCEIEIENPNAPASEEEEGILKKLTSGEVFEQEEGVIALRKITRNKEEARVSLCTARVLLALRGLIASRYGVVQVNAVASLVNLSLEKQNKVRIVRSGFVPFLIDVLKEGLGESQEHAAGALFSLALDDDNKMAIGVLGALHPLMHALRAESQRTRHDSALALYHLTLVQSNRVKLVKLGVIPTLLSMVVAGNLASRVLLILCNLAVCTEGRTAMLDANAVECLVGLLRGNELDSEATRENCVAALYALSHRSLRFKGLAKDARVVEVLKEVEETGTERAREKARKVLHMLRTVGDGDGEEDEEFFDSAGLTRNRYRVGAARNHNLVNTTTLTILLLSKVVNADSNDVENVIRLGGAS 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4163g00003 551 SUPERFAMILY ARM repeat 213 484 IPR016024 -
Mupr4163g00003 551 PANTHER U BOX DOMAIN-CONTAINING 25 484 - -
Mupr4163g00003 551 Pfam U-box domain 28 95 IPR003613 GO:0004842|GO:0016567
Mupr4163g00003 551 SMART arm_5 321 361 IPR000225 GO:0005515
Mupr4163g00003 551 SMART arm_5 401 444 IPR000225 GO:0005515
Mupr4163g00003 551 SMART arm_5 280 320 IPR000225 GO:0005515
Mupr4163g00003 551 SUPERFAMILY RING/U-box 11 100 - -
Mupr4163g00003 551 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 98 IPR013083 -
Mupr4163g00003 551 SMART Ubox_2 28 91 IPR003613 GO:0004842|GO:0016567
Mupr4163g00003 551 FunFam RING-type E3 ubiquitin transferase 7 99 - -
Mupr4163g00003 551 ProSiteProfiles U-box domain profile. 24 98 IPR003613 GO:0004842|GO:0016567
Mupr4163g00003 551 Gene3D - 210 388 IPR011989 -
Mupr4163g00003 551 FunFam RING-type E3 ubiquitin transferase 208 484 - -
Mupr4163g00003 551 Gene3D - 389 489 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4163g00003 Mupr-Chr4163 12381 15791 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4163g00003 1 513 U-box Gene Family AT5G65200 58.135 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4163g00003 - - gmx:100784564 858.211