LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr4160g00003	ATGGCAGGGCGGTCGCAGCTCGACGACGGGGTTATCGTAGAAGATAGGGGTGACATTGACATTGTTGGAGGCTTAAACGACGAGACTCGGTGCCGTTTCGAGGAGTTTCTTGTTGAGTTCTTGAGTGAGATCTGTGCGACTAATTGCTTTTTGCCTTTTCCTCCAATGCTGGGTGATGGGAAGCGCGTGGATTTGTATAAGCTGTTCTTGGTGGTAAGAGGGAAAGGTGGATACGACGCCGTTTGCAATGGAAAGTTGTGGGATTCGGTTGGGGAGGAGTCTGGGTTGGGTGTGAGTGTGGGTTCCTCTGTTAAGCTGGTTTATAGTAAGTACTTGGGTGTTTTAGATGGATGTATGAAGAAAGTTGCTGGGAGTAAGGTGTCCCCTGAGAGTGGTTTGGTGGATGATAGAGATAAGTTCGGGAGGCGTTTGATGGAGCTGCAGGCTGAGGTGGAAGGGTTGTTGTTCGGTGATGAGGCGGCTCAAGAGGAGGTCAAGGGTGGACTTGATGATGGTGACTTGGAGGGCAGGAAGTTGTGTGGAGCCAATGTGGTGAAGGGTTTTGGTTTGGAGGGTAGTGGAGATGGAAATGGAGGACCTCCTGATTCGGAGGTGCTGGACCATGGGATGGATGAGTCAGTTCTGGAAAACTTGGGTGAGGGAAATGATGCAATGGAAGTGGATGAAGAGTTCAATGGAGGGAAAGTGTCTGATGAGCAGGCAGTGGATGAATCGGATGGGGCGAATAACAGCGGGGCTGGATTGTTGAGTGGAGGTGAGACGTGTGATGACAATGATGATAAGGGCTTAGTATTGGATCCATCTAGTGGTAACAATGATGGTGATGGTTCTGGTAGTAAGAGGAAGAGAGAGTCTTTGTCAGATTCATCTGGTGGTGATAGTGATAGTTCTGGTCATAAGAGAATGAGAGAGTCTGTGATAGACATGCTAAGCTGGGTTACAGGTGTTGCAAAGAATCCTTGTGATCCTGAAGTTGGTTCAATACCTGAAAAGCCAAAGTGGAAGTCTTACAGTAATCAGGAGGTGTGGAAGCAGGTGTTGTTGTTTCGAGAAGCTGTGTTTCTCAAAAGAGGTTTTGAGCCAAGAGGTTCCGAGGCAAGCAGTGAACAACGTAGTTGGCAGAGTCAGAAGATGCATCCTTGCTTGTATGATGATAACCTTGGGACAAATTACAATCTTAGAGAGAGGTTGAAACGTGACAAAAAGCTTTTATTTGGACAACCTACATCATCCGTACGAAGCTCTTCAGATTCATCTGTAGGAACAGAGAACAGAACACCAAGTCCACATACTGAAGATCGTTCTGAGAAACGGTTGCTTGATTCCTCTGATGCAAATTCAGGTCTTGACAGATGCGCTACAGTACGCATGCCTTTGGGGGCAAATCATCAAGCTGAAATACCAGAATGGACTGGCATGACTTCTGATAGTGATTCTAAGTGGTCAGGGTCCCAAATATGGCCATCTTCAACAGTAAATACCAGACTACTTATTGAAAGGGACCCCATAGGAAAGGGAAGACAAGATACATGTGGCTGCTCAATACCAGGTTCTGTCGAGTGTGTAAGATTCCACATTGCTGAGAAAAGGGCTAAAGTTAAGCTGGAATTGGGTGCAGCATTTTATTGTTGGAATTTTGATAAGGTAGGTGAAGATGTTAGGCTATTTTGGAAGGAGGAAGAAGAGAAAAAATTTGCTGATGTGGTACGATCAAACTCTTCATCGTCTGAGACATATTTCTGGGATCATATCTTTAGGGCATTTCCTACGAAGAGCAGGGAAGATTTAGTTAGCTACTATTTCAATGTCTTTATTTTGCAGCGCAGAGGATACCAAAATAGGCATACTCCCGATAACATTGACAGTGATGATGATGATGAATCTGGACCACTGAGGAATGTTTTTGGACATCAGACACAGAATTCTGGACATCAAACACAGAATTCTGGACATCAGACCCAGAATTCGCGTGGCTCCATCTTATTAACCCCCAAAAAGTCACAGACAAAGGGAAAATAG	2040	0.4544	MAGRSQLDDGVIVEDRGDIDIVGGLNDETRCRFEEFLVEFLSEICATNCFLPFPPMLGDGKRVDLYKLFLVVRGKGGYDAVCNGKLWDSVGEESGLGVSVGSSVKLVYSKYLGVLDGCMKKVAGSKVSPESGLVDDRDKFGRRLMELQAEVEGLLFGDEAAQEEVKGGLDDGDLEGRKLCGANVVKGFGLEGSGDGNGGPPDSEVLDHGMDESVLENLGEGNDAMEVDEEFNGGKVSDEQAVDESDGANNSGAGLLSGGETCDDNDDKGLVLDPSSGNNDGDGSGSKRKRESLSDSSGGDSDSSGHKRMRESVIDMLSWVTGVAKNPCDPEVGSIPEKPKWKSYSNQEVWKQVLLFREAVFLKRGFEPRGSEASSEQRSWQSQKMHPCLYDDNLGTNYNLRERLKRDKKLLFGQPTSSVRSSSDSSVGTENRTPSPHTEDRSEKRLLDSSDANSGLDRCATVRMPLGANHQAEIPEWTGMTSDSDSKWSGSQIWPSSTVNTRLLIERDPIGKGRQDTCGCSIPGSVECVRFHIAEKRAKVKLELGAAFYCWNFDKVGEDVRLFWKEEEEKKFADVVRSNSSSSETYFWDHIFRAFPTKSREDLVSYYFNVFILQRRGYQNRHTPDNIDSDDDDESGPLRNVFGHQTQNSGHQTQNSGHQTQNSRGSILLTPKKSQTKGK	679

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr4160g00003	679	MobiDBLite	consensus disorder prediction	283	307	-	-
	Mupr4160g00003	679	SMART	bright_3	28	121	IPR001606	GO:0003677
	Mupr4160g00003	679	MobiDBLite	consensus disorder prediction	621	638	-	-
	Mupr4160g00003	679	ProSiteProfiles	ARID domain profile.	27	120	IPR001606	GO:0003677
	Mupr4160g00003	679	PANTHER	AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2	26	676	-	-
	Mupr4160g00003	679	MobiDBLite	consensus disorder prediction	640	679	-	-
	Mupr4160g00003	679	Pfam	ARID/BRIGHT DNA binding domain	42	112	IPR001606	GO:0003677
	Mupr4160g00003	679	Pfam	Myb-like DNA-binding domain	564	610	IPR001005	-
	Mupr4160g00003	679	MobiDBLite	consensus disorder prediction	235	307	-	-
	Mupr4160g00003	679	CDD	SANT	564	611	IPR001005	-
	Mupr4160g00003	679	MobiDBLite	consensus disorder prediction	434	451	-	-
	Mupr4160g00003	679	SMART	ELM2_2	464	515	IPR000949	-
	Mupr4160g00003	679	SUPERFAMILY	ARID-like	29	116	IPR036431	GO:0003677
	Mupr4160g00003	679	SMART	ARID_2	24	116	-	-
	Mupr4160g00003	679	MobiDBLite	consensus disorder prediction	621	679	-	-
	Mupr4160g00003	679	CDD	ARID	32	112	-	-
	Mupr4160g00003	679	MobiDBLite	consensus disorder prediction	414	433	-	-
	Mupr4160g00003	679	MobiDBLite	consensus disorder prediction	411	455	-	-
	Mupr4160g00003	679	Gene3D	-	24	126	IPR036431	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr4160g00003	Mupr-Chr4160	23003	26202	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	ARID	Mupr4160g00003		ARID	1.9e-09	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr4160g00003	-		-	gmx:100779445	894.034