Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4160g00001 ATGACACAGAAACGAGTGGAGCGCGTACAGTGTGGACAACCCCACCAACACAACACAGTAACATCAAAAGTAACACCCAACACAGAATCGAAGCTTTCACACTTCTCAATTTCACAACCCCCTCCATCCCTTTTCGTCCAACCTATTTCCCACACCCTCCTTTCAAATAAGGTAGAAGATAATGAGAGTATCACTGGTAAGTTTGATTATTTAACAGAAAAGGACAGCTGGAAAATGGGAGGTTGCTGTTGTTCTGCCAGGAAACCTCACCTGCATGGAACGCCAGTGTATTACTATTGCCCACCAAGTATAGAAGAGCGTGAGTCTTTAACTTCTAATGATGGTGCGGCTGCTTCTCTCACTACGGGATTGCTGGTAGGCTTGAACCTGGAAACTTCCACGCCCGATACATACCAGCCCCCTCCTACCCCTCTACCTTATGATATGGTCCTGGGAGGTCCAGTATCAACAGATTCTGAATCAGGCAGAGAAACAGTTAGTGGAAGTAGCTTTGGAACATTAATTACATGTGACGATCTTGAAGAATCTGACTGTAAAGCTAAAGTTAATTCGGCACCTATATCTCCAAGCAAGGCAGAACTGTCAAAATCAAATGAATTTCATGCATTGGTGACAGAAGAAGAGGATGGCTGTCCAATTTGTCTTGAAGAATATGATGTTGAGAATCCTAAAACTCTGACAAAATGTGAACACCACTTTCACTTGTCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGTCCTATATGCGATCAGGAGATGATATTTGACCAGACACTGAACTAG 810 0.4346 MTQKRVERVQCGQPHQHNTVTSKVTPNTESKLSHFSISQPPPSLFVQPISHTLLSNKVEDNESITGKFDYLTEKDSWKMGGCCCSARKPHLHGTPVYYYCPPSIEERESLTSNDGAAASLTTGLLVGLNLETSTPDTYQPPPTPLPYDMVLGGPVSTDSESGRETVSGSSFGTLITCDDLEESDCKAKVNSAPISPSKAELSKSNEFHALVTEEEDGCPICLEEYDVENPKTLTKCEHHFHLSCILEWMERSDSCPICDQEMIFDQTLN 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4160g00001 269 MobiDBLite consensus disorder prediction 1 37 - -
Mupr4160g00001 269 ProSiteProfiles Zinc finger RING-type profile. 218 259 IPR001841 -
Mupr4160g00001 269 FunFam Putative E3 ubiquitin-protein ligase RHB1A 194 263 - -
Mupr4160g00001 269 Pfam Ring finger domain 218 258 IPR001841 -
Mupr4160g00001 269 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 116 266 - -
Mupr4160g00001 269 CDD RING-H2_AIRP1-like 214 262 - -
Mupr4160g00001 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 265 IPR013083 -
Mupr4160g00001 269 SMART ring_2 218 258 IPR001841 -
Mupr4160g00001 269 SUPERFAMILY RING/U-box 209 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4160g00001 Mupr-Chr4160 707 4909 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4160g00001 79 269 C3H Transcription Factor Family AT4G00335 60.733 1.23e-79 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4160g00001 - - gmx:100804435 399.823