Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4154g00004 ATGGATCTTCAAAGGCAAGATCCATGCCCTTCTGAAAATTTGAACACCATCACATTTTCAGACACTTTGCCATGCCCAAAACCCTCCATGGACACTCAAACAAAGAAGAATCACACAGAGAAGGAAGATCAAACACACCCACATGACTCAGTTCCTCGTTTTTTACTAGATCTAAGTCTCTCCAGCAAGGATTCAGTTGATGATTCAAAGCCAGAACTCAACCTCCTCAATTGTTTCCACACAAATTTCTCAGAGAATTCCTCAGAATCTAGTCAGGGAAATGAACTTGATCCCCGGGTTTTCTCATGCAACTACTGCCAAAGAAAGTTTTATAGTTCTCAGGCACTTGGGGGACACCAGAATGCACACAAACGTGAAAGAACTTTGGCCAGAAGAGGATACAAAACTGGTGCAGCAGATTTTGGACACACGTACTCCAGCATGCCTTTTCTGCCTTCACATGGCTTATACAACAAAGCACTTGGAATTCAGGTTCATTCTATGATTAACAAACCTTCTCATCAAACACCCTTTTTTGGTTTGTGCCATTCCAAAGGGTGGCAGAGACAGCCTTTGGATTCACAACCGGCAATTGGGAATTTTCGTGTGGGGGCAGAAACTGAGTCATCTTTGGCTGATAGTGTTCCAAAGTTAGGCAAGTTTTCCACAAGGCTGGTGACAGAGGGGTTTGGAGATTGGTCCACCAAAATGCACAGTTTCAATGGCTGTGATTGTCTCACTGACTCCTACTTTGACCCACCTGTAGTTGGAGAAATCGACCATCTCTATTGGGATCAGAGAAGCTACGAATCTTAA 816 0.4363 MDLQRQDPCPSENLNTITFSDTLPCPKPSMDTQTKKNHTEKEDQTHPHDSVPRFLLDLSLSSKDSVDDSKPELNLLNCFHTNFSENSSESSQGNELDPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLARRGYKTGAADFGHTYSSMPFLPSHGLYNKALGIQVHSMINKPSHQTPFFGLCHSKGWQRQPLDSQPAIGNFRVGAETESSLADSVPKLGKFSTRLVTEGFGDWSTKMHSFNGCDCLTDSYFDPPVVGEIDHLYWDQRSYES 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4154g00004 271 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Mupr4154g00004 271 SUPERFAMILY beta-beta-alpha zinc fingers 98 128 IPR036236 -
Mupr4154g00004 271 Gene3D Classic Zinc Finger 79 140 - -
Mupr4154g00004 271 FunFam Zinc finger protein 2 79 147 - -
Mupr4154g00004 271 MobiDBLite consensus disorder prediction 8 32 - -
Mupr4154g00004 271 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 207 IPR044246 GO:0009788
Mupr4154g00004 271 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Mupr4154g00004 271 MobiDBLite consensus disorder prediction 1 51 - -
Mupr4154g00004 271 MobiDBLite consensus disorder prediction 33 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4154g00004 Mupr-Chr4154 22433 25025 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4154g00004 16 201 C2H2 Transcription Factor Family AT5G10970 46.114 1.67e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mupr4154g00004 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4154g00004 - - gmx:100816861 384.415