Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4131g00001 ATGGAAACAGTTTACCGGTTGAAACCTCTTTTGCCTTGTGTAGAGGATGTAGTTAGAGTTGGTAACGCGAGTGTTTCGGCTGCTACTACTTCTGTAGGATCAGCAGCAACTTGTTTTCTCCAGCTAGAAGCTCCTCAACAGAATGTAACCGACTCAGATATGACGGATCGGATGGTCAAGATCCAGATCGCCAATCACCCTCTTTATCCAGATTTACTCTCTGCATATATAGAATGCCAAAAGGTTGGAGCACCGCCAGAACTGGCATCCCTTCTTGAAGAAATAGGTCGAGAAAGTCACCGCATGAATATTACTCGCCGTGGGTTAGGGGATGGTTCTGAACTAGACCACTTCATGGGAACATACTGCGAAGTTCTTCATAGGTACAAAGAGGAGTTGTCCAGGCCCTTCAACGAAGCGACTTTGTTTTTGGGTAACATGGAATCACAACTCAGCAACCTTTGTAATGGAGCACTAACAAAGTCATCGGATAACAACCGTTCCGATGAGATAGCTAGTGGGGCATCAGAGGAGGAATTAAGTTGTGGGGAGATGGAAGCCTTTGAAGGTTATGTATCTTGTCCAGATGATCAAAAGATTAAAGAGATGCTCCTTCGCAAATACAGTGGCCACTTTAGCGGTTTGAGAAAGGAATTTCTAAAACGAAGAAAAAAGGGTAAGCTACCAAAGGATGCAAGGATAACACTCATGGACTGGTGGAACACCCATCATAGATGGCCATATCCTACGGAGGAGGAGAAAGTGAAGTTATCAGAAATGACTGGACTGGATCAAAAGCAGATAAACAATTGGTTCATCAATCAGAGGAAACGGCATTGGAAACCAACTGAAGATATGCGATTTGCCGTTATGGACGGGATAAATGGTGGCATAGGAGGACCAATGATTTTTTAG 915 0.4404 METVYRLKPLLPCVEDVVRVGNASVSAATTSVGSAATCFLQLEAPQQNVTDSDMTDRMVKIQIANHPLYPDLLSAYIECQKVGAPPELASLLEEIGRESHRMNITRRGLGDGSELDHFMGTYCEVLHRYKEELSRPFNEATLFLGNMESQLSNLCNGALTKSSDNNRSDEIASGASEEELSCGEMEAFEGYVSCPDDQKIKEMLLRKYSGHFSGLRKEFLKRRKKGKLPKDARITLMDWWNTHHRWPYPTEEEKVKLSEMTGLDQKQINNWFINQRKRHWKPTEDMRFAVMDGINGGIGGPMIF 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4131g00001 304 Gene3D - 217 290 - -
Mupr4131g00001 304 ProSiteProfiles 'Homeobox' domain profile. 219 282 IPR001356 GO:0003677
Mupr4131g00001 304 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 70 289 - -
Mupr4131g00001 304 Pfam KNOX2 domain 110 155 IPR005541 GO:0003677|GO:0005634
Mupr4131g00001 304 SMART KNOX2_2 105 156 IPR005541 GO:0003677|GO:0005634
Mupr4131g00001 304 ProSiteProfiles ELK domain profile. 199 219 IPR005539 GO:0003677
Mupr4131g00001 304 SUPERFAMILY Homeodomain-like 221 293 IPR009057 -
Mupr4131g00001 304 SMART ELK_2 199 220 IPR005539 GO:0003677
Mupr4131g00001 304 Pfam Homeobox KN domain 239 278 IPR008422 GO:0003677|GO:0006355
Mupr4131g00001 304 ProSitePatterns 'Homeobox' domain signature. 257 280 IPR017970 GO:0000981|GO:0006355
Mupr4131g00001 304 Pfam KNOX1 domain 59 100 IPR005540 GO:0003677|GO:0005634
Mupr4131g00001 304 CDD homeodomain 222 282 IPR001356 GO:0003677
Mupr4131g00001 304 Pfam ELK domain 201 220 IPR005539 GO:0003677
Mupr4131g00001 304 SMART KNOX1_2 57 101 IPR005540 GO:0003677|GO:0005634
Mupr4131g00001 304 SMART HOX_1 221 286 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4131g00001 Mupr-Chr4131 8629 15109 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4131g00001 25 298 Homeobox Transcription Factor Family AT1G23380 49.462 1.00e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mupr4131g00001 KNOX2 1.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4131g00001 - - gmx:100814830 494.582