Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4130g00001 ATGCCGCTTCCTACCAAATCCGTGGAAGGTGAGGAGTGGGGAACCCCAACCAACAATCTCTGGATCGGAAATCTGCCGCCGGATATCACCGAATCTGATCTCACGAGCCTCTTCGCTCAGTACGGTTCTCTCGACGCACTCATCTCCTATTCCGCTCGCACTTTCGCTTTCGTGTTGTTCAGGCGCGTCGAAGACGCCAAGGCCGCCAAAACCAACTTACAAGGCGCTCCGCTGCGCGGGATTCAAATCAGAATTGAGTTCGCCAGACCGGCAAATCCGTGTAAACAATTATGGGTGGGTGGTGTGACTCACTATGTTGCGAAGGAGGATTTGGAAGCTGAATTTCGGAAATTCGGCAAGGTTGAGGATTTTAAGTTCTTCGGAGACCGCGGTACTGCGTGTGTTGAGTTTCTCAATCTGGATGATGCTATTCGGGCCATGAAAGTCATGAACTGGAAGCGATTAGGTGGTGGCCAGATTTGTGTGGACTTCCTTCGATCACAATCTACGAAACGAGATCTTTTGGTTGATCATGGACAGTTTCAGGTTAGACCACAGCATTTACAGCCTTCAATAGGGAGGAATAGTCAACCCAGTAACATTTTGTGGATAGGTTTTCCTCCTTCTTTTCAAATTGATGAACAAATGCTCCACAATGCCATGATTCTATTTGGTGAAATTGAGAGAATTAAGAGTTTTCCTTCTAGACATTATTCATTTGTTGAATTTAGAAGCATTGACGAAGCTCGGCGAGCCAAAGAGGGCCTTCAAGGGCGCCTTTTTAATGATCCTCGAATAACAATTATGTATTCAAGCAGTGAGATGGCACCTGGCAATGATTACCCCAGCTTTTATCCTGGAAGTAAGGGGCCTATACCTGATGGATTAGTTAACGAGCATCCATTTCGACCACTACAAACAGACGTATTTGGTCATAATCGTCCTATGGTTCCAAATAATTTTCCTGGGCAATTGCAACCTGGTGGTATTGCTGGACCTAGTGTCTCAATGCGACCTTTTGCTCCTCAAGGTGTTGAACCTCTTATGTCTGGTCCTGATTTTAATGAGATGGGCACCTTCCACAAATTTCAGGATGGTAGCTCTAAAAGTCAGATGGGTCCAACCTGGAAAAGGCCATCTCCTCCTGCCCCAGGGATGCTTCCTTCTCCTATGCTTGGTATTAGGCCTCCTACAAGATCCGCCTCTGGTGCATGGGATGTATATGACATAAATCAATGTCAGAGAGATTCTAAACGTTCAAGGATAGATAATGCTTTGCTCATTGGTGATACTCCATTCACTTTAAGGAATATAGATCATCATGGATTGGGACCAGAACAACCATTTGCAATTAATCCAGTTATTGGTGGAGGTGGTTCTGGTCGGATGAGTCACCTTGGTCCAGTCAGCACTAGGATCACATATGGAGTACCTGGTTCTGTCCAACCTGATATTGATCATATATGGCGTGGAATTATTGCCAAAGGGGGAACTCCTGTTTGTCGTGCTAGATGTGTGCCTATTGGAAAAGGGATAGGGACAAATGTTCCTGATGTTGTAGATTGTGTTGCTAGGACTGGATTGGATATGCTAATGAAACACTATGCTGATGCAATTGGCTTTGACATTGTTTTCTTTCTCCCTGATAGCGAAGAGGATTTTGCTTCATACACTGAATTCCTTCGGTACCTCAAATCAAAAAACCGTGCTGGTGTTGCCAAGTTTGTTGATAACACCACTTTATTTTTGGTACCTCCTTCTGATTTCTTGACCAAGGTTTTGAAAGTCACAGGACCTGAACGTTTATATGGTGTGGTTCTTAAATTTTCATTAGTTCCAAGTAGCACGTCCATTCAACAAGCAATGCATTTGCCTTCACCCTCTACTCAATATATGCAACAGATTCCTCCTTCACAAGCTGAGTATGGTTTAATATCTGTAAAGGAGGAACAGGTTTTACCAATGGATTATAACAGATTGTTGCATGAGGATTCAAAGCGTCTGCCAAAACCACTTCATTCAGCTACAAGTGTCCCCTCTTCAGCTCATTCTGCTCCTCATGATTATGCTCCTACTTATACTCCTTCTGCATCCCAATCTGGAGTTACATTGACACCTGAACTTATTGCAACTTTAACTTCTTTACTCCCTGCAAGTATACAAACATCAACCACTGGTGGCACAATGACAGCGGTCGATCCTTCTACTGTGAAGCCACCTTTTCCTCCTGTTGCACCTAATGATGGAAATCAATCTCATTTGTGGAAACAAGATCAGCAAATTGCAGATCCACCTAGTCATCCTCCTCAACAGTTTGGGAGTATTCATAGTGCTCAATATCAACCTTATCCAATTGCATCTTCTAGTGACCACCATGCTCAAGTGGTCTCTGGCAGTTCTCATTTCCAAGATTCTGCTTTCAGTCTTCAGCCACTAGGTGCTGTTTCGTCTACCCCCATGACTAATATCATCATACCTCCTCAAAATGTACAGGTAGCTGTGTCCCCTCAAGTCAGTCAACAGTATCAGGCGGAAGTTTCCCACAGCACTGAGAAAGGCTATAGAGTGGTTCCAGGAACAGATGCCTCGTTTCTATATAGTTCTAAGGCATTCCAACAACCTAATAATTTTATTCCCTTATCCAACCAAGTTTCCAATGCTGCTTCACAGCAACAAACTGTAATGCCCTATGCAGTGGACAAAGTTAATTCAGAGCCCCCAAATCAGCAACTTCAACCTGCTTTATTTGGAGTTGGCCAGGGAATGTCAGAATTGGAGGCTGATAAGAACCAGAGGTACCGGTCAACCCTACAGTTTGCTGCCAACCTTCTCCACAAGATACAGCAAACACAAGGAGAGCATGGGCCAGGAAATCAACAATGA 2883 0.4422 MPLPTKSVEGEEWGTPTNNLWIGNLPPDITESDLTSLFAQYGSLDALISYSARTFAFVLFRRVEDAKAAKTNLQGAPLRGIQIRIEFARPANPCKQLWVGGVTHYVAKEDLEAEFRKFGKVEDFKFFGDRGTACVEFLNLDDAIRAMKVMNWKRLGGGQICVDFLRSQSTKRDLLVDHGQFQVRPQHLQPSIGRNSQPSNILWIGFPPSFQIDEQMLHNAMILFGEIERIKSFPSRHYSFVEFRSIDEARRAKEGLQGRLFNDPRITIMYSSSEMAPGNDYPSFYPGSKGPIPDGLVNEHPFRPLQTDVFGHNRPMVPNNFPGQLQPGGIAGPSVSMRPFAPQGVEPLMSGPDFNEMGTFHKFQDGSSKSQMGPTWKRPSPPAPGMLPSPMLGIRPPTRSASGAWDVYDINQCQRDSKRSRIDNALLIGDTPFTLRNIDHHGLGPEQPFAINPVIGGGGSGRMSHLGPVSTRITYGVPGSVQPDIDHIWRGIIAKGGTPVCRARCVPIGKGIGTNVPDVVDCVARTGLDMLMKHYADAIGFDIVFFLPDSEEDFASYTEFLRYLKSKNRAGVAKFVDNTTLFLVPPSDFLTKVLKVTGPERLYGVVLKFSLVPSSTSIQQAMHLPSPSTQYMQQIPPSQAEYGLISVKEEQVLPMDYNRLLHEDSKRLPKPLHSATSVPSSAHSAPHDYAPTYTPSASQSGVTLTPELIATLTSLLPASIQTSTTGGTMTAVDPSTVKPPFPPVAPNDGNQSHLWKQDQQIADPPSHPPQQFGSIHSAQYQPYPIASSSDHHAQVVSGSSHFQDSAFSLQPLGAVSSTPMTNIIIPPQNVQVAVSPQVSQQYQAEVSHSTEKGYRVVPGTDASFLYSSKAFQQPNNFIPLSNQVSNAASQQQTVMPYAVDKVNSEPPNQQLQPALFGVGQGMSELEADKNQRYRSTLQFAANLLHKIQQTQGEHGPGNQQ 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4130g00001 960 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 273 IPR000504 GO:0003723
Mupr4130g00001 960 PANTHER RNA RECOGNITION MOTIF-CONTAINING 14 88 - -
Mupr4130g00001 960 CDD RRM_SF 97 163 - -
Mupr4130g00001 960 CDD SPOC_FPA-like 488 608 - -
Mupr4130g00001 960 Gene3D - 5 92 IPR012677 -
Mupr4130g00001 960 MobiDBLite consensus disorder prediction 669 700 - -
Mupr4130g00001 960 FunFam Flowering time control protein FPA 10 92 - -
Mupr4130g00001 960 Pfam SPOC domain 483 600 IPR012921 -
Mupr4130g00001 960 Gene3D - 191 278 IPR012677 -
Mupr4130g00001 960 CDD RRM_SF 20 86 - -
Mupr4130g00001 960 FunFam flowering time control protein FPA 193 287 - -
Mupr4130g00001 960 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 83 IPR000504 GO:0003723
Mupr4130g00001 960 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 157 IPR000504 GO:0003723
Mupr4130g00001 960 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 266 IPR000504 GO:0003723
Mupr4130g00001 960 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 90 IPR000504 GO:0003723
Mupr4130g00001 960 SUPERFAMILY RNA-binding domain, RBD 184 273 IPR035979 GO:0003676
Mupr4130g00001 960 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 167 IPR000504 GO:0003723
Mupr4130g00001 960 SUPERFAMILY RNA-binding domain, RBD 16 171 IPR035979 GO:0003676
Mupr4130g00001 960 MobiDBLite consensus disorder prediction 750 775 - -
Mupr4130g00001 960 MobiDBLite consensus disorder prediction 724 775 - -
Mupr4130g00001 960 SMART rrm1_1 19 86 IPR000504 GO:0003723
Mupr4130g00001 960 SMART rrm1_1 96 163 IPR000504 GO:0003723
Mupr4130g00001 960 SMART rrm1_1 201 269 IPR000504 GO:0003723
Mupr4130g00001 960 Gene3D - 93 176 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4130g00001 Mupr-Chr4130 2181 6715 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4130g00001 97 268 Eukaryotic Initiation Factors Gene Family AT4G34110 27.869 2.64e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4130g00001 - - gmx:100806555 1550.03