Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr412g00002 ATGAGGCCTGACATGCAAGTTGATTTGAGTCCCTGTAGGTTTAGCATAACCAAAATCTGCCACATTCATGAGTATATGTTGAGAGAGGGTCTTGTGATGTGTTTTATGAGTCTCAGTCTCAGTCGCAGGATGAATAACTCTGTTTCAGAAAACAGTTTTATCATTGAGAGTGATGAAGAGGATGAGGAAAAGGATTTGAACAAGGGTGGAGAAGGTGATGGCAACGATTCTGATTCTTCCAATTACTCAAATGAAAACCCTCCACAGAGAAAGCCCAGTTCTTACAACATCTCATGGCCTCAGAGTTACAGGCAGTCTATTGATCTATACAGTAGTGTGCCATCACCAAACATTGGATTTTTGGGCACACCCTCATTGTCAAGACTAAGCAGTTCTTTCCTTTCTACATCACTAACAAGGAGGCACACTCCTGAAACACTTTCTTCAGCTACAAAGCCTCTTATACAAGCCACAGAAGATGAGCAGCATCAGAGACGTAGCTCTCATACCTTGCTTCCTCCTCTTCCTTCTAGAAGATCTTATTTGATTAAGAAGGATTCCAAGGTTGCTCATGAAGTTCCCTCTCGCCACTGCTCTTTCGGACAAGCTGTGCTTAATGGCATAAATGTTCTTTGTGGTGTTGGAATCCTTTCTACCCCTTATGCTGCCAAAGAAGGTGGATGGATTGGGCTTTCTATCTTGTTAATTTTTGCAATTATTTCATTTTATACTGGTCTGCTCTTGCGTTCCTGCTTGGACAGTGAACCTGAGCTTGAGACATACCCTGATATTGGTCAAGCTGCTTTTGGTACTACTGGACGTATTGCCATTTCAATAGTATTGTACGTGGAATTATATGCTTGTTGCATTGAATATATAATTTTGGAGGGCGATAACTTGTCTTCCTTATTTCCGAGTGCAAACTTAAATTTGGGTGGATTTGAACTGAATTCACGTACACTGTTTGCTGTGATTACTGCTTTGGCTGTTCTTCCTACTGTTTGGCTCCGTGATCTAAGCGTTCTCAGTTACATATCCGCTGGTGGAGTTGTTGCATCAGTTTTAGTGGTTCTCTGCTTGTTATGGATCGGCGTAGACGAAGTTGGCTTCCATAGCAAAGGGACCACACTCAATCTTGCAACTTTTCCTGTTGCTGTTGGTCTTTATGGCTACTGCTACTCAGGACATGCTGTTTTTGGTATTTGTACCTTTTTGTATGCTGGAGCTGCTGTAATGGGATACACAATGTTTGGTGAAGCTATACTCTCTCAGTTCACTCTTAACCTGCCTCAGGAAATGGTAGCCACCAAGATTGCTGTCTGGACTACGGAGTTGATACCATCAAACCATGCCAAGTCTTATCTATATTCCATCTTCATCAGAACAGGGCTTGTACTTTCCACCCTCGTTATTGGTCTCTCAGTTCCCTTTTTTGGTCTGGTGATGTCGTTAATTGGATCATTACTCACAATGCTTGTTACTTTGATACTACCCTGTGCTTGTTTCCTAAGAATCTTGCGGGGCAAAGTGACACGAATTCAGGCAGCACTTTGCATTATAATTATCACAGTAGGTGTTGTATGTGCTGCTTTTGGAACATACTCCGCGCTCTCCGAGATTGAGACTTCTAGTTTGGATATGCAGATGGCCAGTGGGAGTAAGGTAAATTTGCAAACATTAGATGAGGGTTTGCAGCCTTTGCAAAATGGAACTATTGAAGACACCTTGCAGAGTGAGCTGGAGAAGATACTGCAAGAGCAGCGTAATCGACAGTTTATCAATCGAGAGAGGGATTTAAATATTTGTAGGAGTGGAAGTGCGCCTCCCACAGTGGAGGGGTCTTTGAGTGCTTTTGGGAGCCTGAGGAACTCTGATTTTGGAGGGATCAATGGTAGGATAAGTAATAACAATGGACTTATGACTGAAGATGAGATCCGATCACATCCTGCATATCTTTCTTATTATTACTCACATGAGAGTATAAATCCTAGGTTGCCTCCACCGTTGTTGTCAAAAGAAGATTGGCGTGTTGCACAAAGGTTTCATGGTGGTGGGTCTTCTTCAATTGAGGGATTTGGGGACTGGAGGAAGAATGTGGCCACAAATGATGAAGGTTCATCTCTATTTTCAATGCAGCCAGGATTTTCTGTACAACAAGCGGAGAATGATTTGATGGAACTGAGGAAAACTGGTGGATGGAATGGCTCTAGGCAGGGTCCAAGTCAGCTGCTTGACAGTCATATGGACGGTTTTACAAGAATGTCAGGTGCTGGTCTTGGTGGGAGGAGGACGTGTTTCACTGACATTCTTCAGGAAGGACTTGAACAACCTGCTTCATTGTCCAGCACTATGTCACGTCCAGCAAGTCACAATGCATTTGGTGATATTATGGGTTCAACTGGCATTGTTGATCGTGAATCCTTTGAGGGCTTGCGTTCTTCAGCTTCTACCCCTGGATTGGTTGGACTTCAGAACCATGGTGTAAATCTTTCTCATAGTTTTGCATCTGCTGTGGGTACTTCTCTGTCCAGGGTGAAAACCCCTGAACAACAGGTTATTGGGAGACCTGTTGGATCTGCAGCACCCCAAATGAATAGTAAAATTTTCTCTGTTGAGACAAGTGGTATTGGCTTGGGCACCCAGCATTGCCACTCTTCTAATATGACTGATCTTACTGATATGGTGTCGTCTTTATCTGGGTTAAACCTGTCAGGTGCTAGACATGCAGAGCAAGATAATCTTTTGAAATCTAAGCTACAAATGGAAGTTGATCATCATGCTGATGTTCTATTTAGCACACAAAGCAATGCTAATTTTCCCAGACGTAATGAGATTGTAACAAACCTTAACACCTTTAGTTCAAATGAGCAAGTCAATCTACTGAAAAAAACTGCTTCTTCTGCTAATCTTCGCTCAAAAATGTATTCTACTGGAAATGCAACAAGTTTGCCAAGTGCAGACTTCACTGGCCATGTTCCTAATGCATATCTTGTAAACTCAAAATTGAATTCTGTTTACAATAATAATCTCGAGACAGCTTTGAGGCTTCACAGAAATGGACAAAGTTTAGATGCACAAGGAAATCCAGTTGGTCCTGAACTTCATTCCACAACTCTGGACCCACGCTTCATTCAATGCTTGCAGCAAAGTTCTGATTACTCAATGCAAGGGATGAGTAGTTCTGGTCATCCTCTTCAAATGAGAAATTTCCCTGATGCTTCACATGGAGATTTGGAGGGACTTAGGAAAGCATATCTTGAGACACTTCTTACTCAACAAAAGCAACAGTATGAACTCCCACTTTTGAGCAAATCTGGGCTTAATAATGGGGTCTATGGGAGTCATCCATATGGTCTTGGCATGCCATATTCTGGAAAGCAGATTGCAAATTCCACACTTCCTTCTCTTGGATCTGGAAATCCACTATTTGAGAATGAACGTATATCACGCATAAATTCTATGATGAGAAGTTCAATGGGAGGTTCTGGTGGCTCATGGCATGCTGATATTGGCAATAATATGGAGGCAAGATTTGCTTCATCCTTACTAGATGAGTTCAAGAACAAGAAGACCAGACCTTTTGAACTTTCAGATATTGTTGATCATGTCGTTCAATTCAGTACTGATCAGTATGGTAGCCGCTTTATTCAGCAGAAATTAGAAACAGCGTCAGTAGAAGAGAAGACCAAGATATTTCCCGAGATCATTCCTCATGCTCGTGCCTTGATGACTGATGTCTTTGGCAATTATGTTATACAGAAATTTTTTGAGCATGGTACAGAAAGTCAAAGAAAGGAATTAGCCAGCCAACTTACAGGTCATGTTTTACCTCTTAGTCTGCAAATGTACGGTTGCAGAGTGATTCAGAAGGCCTTGGAGGTGGTTGATATGGATCAGCAGGGTCAAATGGTGTCTGAGCTCAATGGTGCAGTAATGAAATGTGTACGTGATCAAAATGGAAACCATGTTGTTCAGAAGTGTATAGAGTGTGTCCCTCAAGATAAAATTCAGTTTATTGTTTCATCCTTTTATGGGCAAGTTGTTGCACTTTCTACTCATCCTTATGGGTGTAGAGTTATTCAGAGGGTTCTAGAACATTGTGATGATCTAAATACACAACAAATTATCATGGATGAAATCATGCAATCTGTCAGCACTTTAGCACAGGATCAATATGGAAATTATGTTATTCAGCATATCGTGGAACATGGTAAACCACATGAGCGGACTGCTATTATCAACAAGCTTGCCGGGCAGATTGTTAAGATGAGCCAGCAAAAGTTTGCTTCTAATGTTATCGAGAAGTGTTTGGCTTTTGGTAGCCCTGAAGAACGTCAGATTTTGGTGAATGAAATGCTTGGTACTTCTGATGAGAATGAACCCTTACAGGCTATGATGAAGGACCCTTTTGGAAATTATGTTGTGCAAAAGGTTCTTGAGACTTGTGATGATCGAAGTCTTGAGCTGATCCTTTCTCGCATCAAGGTTCACTTAAATGCACTGAAGCGGTATACTTATGGCAAACACATAGTTTCTCGCGTGGAGAAGCTCATAACCACCGGAGAGAGGCGCATAGGGTTGTTGGCCTAA 4590 0.419 MRPDMQVDLSPCRFSITKICHIHEYMLREGLVMCFMSLSLSRRMNNSVSENSFIIESDEEDEEKDLNKGGEGDGNDSDSSNYSNENPPQRKPSSYNISWPQSYRQSIDLYSSVPSPNIGFLGTPSLSRLSSSFLSTSLTRRHTPETLSSATKPLIQATEDEQHQRRSSHTLLPPLPSRRSYLIKKDSKVAHEVPSRHCSFGQAVLNGINVLCGVGILSTPYAAKEGGWIGLSILLIFAIISFYTGLLLRSCLDSEPELETYPDIGQAAFGTTGRIAISIVLYVELYACCIEYIILEGDNLSSLFPSANLNLGGFELNSRTLFAVITALAVLPTVWLRDLSVLSYISAGGVVASVLVVLCLLWIGVDEVGFHSKGTTLNLATFPVAVGLYGYCYSGHAVFGICTFLYAGAAVMGYTMFGEAILSQFTLNLPQEMVATKIAVWTTELIPSNHAKSYLYSIFIRTGLVLSTLVIGLSVPFFGLVMSLIGSLLTMLVTLILPCACFLRILRGKVTRIQAALCIIIITVGVVCAAFGTYSALSEIETSSLDMQMASGSKVNLQTLDEGLQPLQNGTIEDTLQSELEKILQEQRNRQFINRERDLNICRSGSAPPTVEGSLSAFGSLRNSDFGGINGRISNNNGLMTEDEIRSHPAYLSYYYSHESINPRLPPPLLSKEDWRVAQRFHGGGSSSIEGFGDWRKNVATNDEGSSLFSMQPGFSVQQAENDLMELRKTGGWNGSRQGPSQLLDSHMDGFTRMSGAGLGGRRTCFTDILQEGLEQPASLSSTMSRPASHNAFGDIMGSTGIVDRESFEGLRSSASTPGLVGLQNHGVNLSHSFASAVGTSLSRVKTPEQQVIGRPVGSAAPQMNSKIFSVETSGIGLGTQHCHSSNMTDLTDMVSSLSGLNLSGARHAEQDNLLKSKLQMEVDHHADVLFSTQSNANFPRRNEIVTNLNTFSSNEQVNLLKKTASSANLRSKMYSTGNATSLPSADFTGHVPNAYLVNSKLNSVYNNNLETALRLHRNGQSLDAQGNPVGPELHSTTLDPRFIQCLQQSSDYSMQGMSSSGHPLQMRNFPDASHGDLEGLRKAYLETLLTQQKQQYELPLLSKSGLNNGVYGSHPYGLGMPYSGKQIANSTLPSLGSGNPLFENERISRINSMMRSSMGGSGGSWHADIGNNMEARFASSLLDEFKNKKTRPFELSDIVDHVVQFSTDQYGSRFIQQKLETASVEEKTKIFPEIIPHARALMTDVFGNYVIQKFFEHGTESQRKELASQLTGHVLPLSLQMYGCRVIQKALEVVDMDQQGQMVSELNGAVMKCVRDQNGNHVVQKCIECVPQDKIQFIVSSFYGQVVALSTHPYGCRVIQRVLEHCDDLNTQQIIMDEIMQSVSTLAQDQYGNYVIQHIVEHGKPHERTAIINKLAGQIVKMSQQKFASNVIEKCLAFGSPEERQILVNEMLGTSDENEPLQAMMKDPFGNYVVQKVLETCDDRSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTGERRIGLLA 1529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr412g00002 1529 ProSiteProfiles Pumilio RNA-binding repeat profile. 1451 1492 IPR001313 GO:0003723
Mupr412g00002 1529 Pfam Nucleic acid binding protein NABP 937 1197 IPR012940 -
Mupr412g00002 1529 Pfam Nucleic acid binding protein NABP 879 937 IPR012940 -
Mupr412g00002 1529 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 660 1517 - -
Mupr412g00002 1529 ProSiteProfiles Pumilio RNA-binding repeat profile. 1270 1305 IPR001313 GO:0003723
Mupr412g00002 1529 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 1178 1518 IPR033133 GO:0003723
Mupr412g00002 1529 ProSiteProfiles Pumilio RNA-binding repeat profile. 1306 1341 IPR001313 GO:0003723
Mupr412g00002 1529 FunFam Pumilio homolog 1 isoform 2 1177 1524 - -
Mupr412g00002 1529 ProSiteProfiles Pumilio RNA-binding repeat profile. 1379 1414 IPR001313 GO:0003723
Mupr412g00002 1529 Pfam Pumilio-family RNA binding repeat 1274 1307 IPR001313 GO:0003723
Mupr412g00002 1529 Pfam Pumilio-family RNA binding repeat 1202 1236 IPR001313 GO:0003723
Mupr412g00002 1529 Pfam Pumilio-family RNA binding repeat 1241 1271 IPR001313 GO:0003723
Mupr412g00002 1529 Pfam Pumilio-family RNA binding repeat 1346 1381 IPR001313 GO:0003723
Mupr412g00002 1529 Pfam Pumilio-family RNA binding repeat 1419 1453 IPR001313 GO:0003723
Mupr412g00002 1529 Pfam Pumilio-family RNA binding repeat 1465 1492 IPR001313 GO:0003723
Mupr412g00002 1529 Pfam Pumilio-family RNA binding repeat 1384 1416 IPR001313 GO:0003723
Mupr412g00002 1529 Pfam Pumilio-family RNA binding repeat 1317 1340 IPR001313 GO:0003723
Mupr412g00002 1529 SUPERFAMILY ARM repeat 1181 1515 IPR016024 -
Mupr412g00002 1529 ProSiteProfiles Pumilio RNA-binding repeat profile. 1234 1269 IPR001313 GO:0003723
Mupr412g00002 1529 MobiDBLite consensus disorder prediction 51 97 - -
Mupr412g00002 1529 ProSiteProfiles Pumilio RNA-binding repeat profile. 1415 1450 IPR001313 GO:0003723
Mupr412g00002 1529 SMART pum_5 1270 1305 IPR001313 GO:0003723
Mupr412g00002 1529 SMART pum_5 1234 1269 IPR001313 GO:0003723
Mupr412g00002 1529 SMART pum_5 1379 1414 IPR001313 GO:0003723
Mupr412g00002 1529 SMART pum_5 1306 1341 IPR001313 GO:0003723
Mupr412g00002 1529 SMART pum_5 1198 1233 IPR001313 GO:0003723
Mupr412g00002 1529 SMART pum_5 1457 1492 IPR001313 GO:0003723
Mupr412g00002 1529 SMART pum_5 1415 1450 IPR001313 GO:0003723
Mupr412g00002 1529 SMART pum_5 1342 1377 IPR001313 GO:0003723
Mupr412g00002 1529 MobiDBLite consensus disorder prediction 73 97 - -
Mupr412g00002 1529 CDD Pumilio 1194 1514 IPR033712 GO:0003723
Mupr412g00002 1529 ProSiteProfiles Pumilio RNA-binding repeat profile. 1342 1378 IPR001313 GO:0003723
Mupr412g00002 1529 Gene3D - 1178 1524 IPR011989 -
Mupr412g00002 1529 ProSiteProfiles Pumilio RNA-binding repeat profile. 1198 1233 IPR001313 GO:0003723
Mupr412g00002 1529 Pfam Transmembrane amino acid transporter protein 449 536 IPR013057 -
Mupr412g00002 1529 Pfam Transmembrane amino acid transporter protein 198 398 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr412g00002 Mupr-Chr412 43205 63783 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr412g00002 44 479 Amino Acid or Auxin Permease AAAP Family AT2G39130 63.843 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr412g00002 K17943 - gmx:100798281 1761.89