Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4128g00003 ATGGGAATTCAGGGGTTTTTGCCGCTATTGAAATCGATTATGGTTCCAATCCACATCAAGGACTTGAAGGGTTGTTCTGTAGCGGTAGACACCTACTCTTGGCTCCACAAAGGTGCCCTCTCTTGCAGCACCGAACTCTGCAAAGGGATACCCACTACCAGGCACATTGAGTATTGCATGCACAGAGTAAATTTGTTGCGCCATTTTGGGGTTAAGCCTATTCTAGTGTTTGATGGAGGGCTTCTGCCAATGAAGGGTGAACAAGAGAACAAGCGTGCCAGGGTTAGGAAGGATAATTTTGCACGTGCAGTTGAACATGAATCAGATGGAAATTCTTCTGCTGCCTATGAGTGCTTCCAGAAAGCAGTTGATATTTCACCTCTTGTTGCACGAGACCTAATTCAAGTATTGAAGCAGGAGAATGTGCAGTATATTGTTGCTCCTTACGAGGCAGATGCCCAAATGACATTCTTGGCAATTAGTGGACAAGTTGATGTAGTTATAACTGAAGACTCTGATCTTATACCATTTGGTTGCCCTAGAATTATCTTTAAAATGGACAAGTTTGGTCAAGGTGTTCAGTTTCAGTATTCCATGCTACAAAAGAATAAGGAGCTTAGTTTTGAAGGGTTCAACAGACAAATGCTTCTTGAAATGTGTATTTTGAGTGGCTGTGACTATCTTCAGTCCTTGCCAGGTATGGGTCTCAAAAGGGCTCATGCAAGCATTAAAAAATTTGGAAGTTATGACAAGGTTCTTAAGCACTTGAGATATAGTGGAGTTTCTGTGCCTCCCTTTTATGAAGAGTCATTCAAAAAGGCTATACTTACGTTCCAACATCAACGGGGAGAGATTCTTACAGACAGATTGGCAATTGTGGGAACTAGTCAATTCAACACTCCTCATTCTGAAAGTGCAAAGAAAAAGATTGATTTGCCTGTGCAGAAGAATCTCTTGACCAACTTTTCCTTAGCCATGAAAGGTTTTGCATCACTTGAAGCGAAAAGGAAATTCAGAGCACCTCGGGTGTCACCTACTACTGCTAATGAAACAAATAACTCTACTGCATCAGTAATTGACTCTGAGAATTGGGGAAGTGCTCCTCTTCCTAATAGCCATATTGAATATGGTTCTGCCACAAAAATTTCTGAATTTACAGAGTTTCCATGTCATGTGTCTATGGTGGGTGAGGAGAAGAAAAGCCCTGAACATACAGTACTGCAACAGCCCAGGCAGTCAATTCATAAACCGTGTTTGGGGTTGCATAACGACCATGAGCACACAAATGTCCAAGACACAGTTGAAGGAAAAACCAGGGAGGCAACAAGAAAGGTAATTGTAAGGAGTGCTTATTTTCAGCACAAGCAAGTAGTAAGGAATGTTTGTAACGAGAAACAAGATCGTCTGTCCTCTGGCATTGTCATTGATGAGAGAAAAAATGCCATATCTGACAGTGATATATGTAACAACCATTTGAAGAATAAAGACCAGGGAGTCCAAGACACAGGTGAAGGAAGAACTAAGGAGGCAACAAGAAAGATAATTGTAAGGAGTGCTTACTTTCAGCACAAGCAAGTAGAAAAAAATGTTTGTGACGAGAAACAAGAATGCCTGTCCTCTGGCACTGTCATTGACGAGAGAAAAAATGCCATATTTGACAGTGATATATTTAACAACCATTTGAAGAATAAAGACCTGAAAAGGAAGATCTCCCCTAACGACAATATACATAATGAGAATTTGCAGTCCAGGCAAATGCACCGTGCTCCACCTCCTCATAATAATGATGGCCGTGATCACAATGTTGAGGGACCATTTACAGAGAATAATGCTAAAGAAGAAAAATTTGGGACAAACATTTCCCATCTGGGCCAGTATTCAGAAATAGCTGAGAAGTCTATGGAAAAATTTGTGTCTGTGATATCATCCTTTAGATGCACTTCTGGCTCTCGCGTCAGTGGTCTCCGAGCTCCTCTGAAAGATGTTCGAAACATTTCTGACAATAGGCCAAAGACTGTGGACTTTGGACAATATGCTTATGTGGCAAAACAAACCAAGAGTAGAAGAATAGCTCCTGGAAATTAA 2085 0.411 MGIQGFLPLLKSIMVPIHIKDLKGCSVAVDTYSWLHKGALSCSTELCKGIPTTRHIEYCMHRVNLLRHFGVKPILVFDGGLLPMKGEQENKRARVRKDNFARAVEHESDGNSSAAYECFQKAVDISPLVARDLIQVLKQENVQYIVAPYEADAQMTFLAISGQVDVVITEDSDLIPFGCPRIIFKMDKFGQGVQFQYSMLQKNKELSFEGFNRQMLLEMCILSGCDYLQSLPGMGLKRAHASIKKFGSYDKVLKHLRYSGVSVPPFYEESFKKAILTFQHQRGEILTDRLAIVGTSQFNTPHSESAKKKIDLPVQKNLLTNFSLAMKGFASLEAKRKFRAPRVSPTTANETNNSTASVIDSENWGSAPLPNSHIEYGSATKISEFTEFPCHVSMVGEEKKSPEHTVLQQPRQSIHKPCLGLHNDHEHTNVQDTVEGKTREATRKVIVRSAYFQHKQVVRNVCNEKQDRLSSGIVIDERKNAISDSDICNNHLKNKDQGVQDTGEGRTKEATRKIIVRSAYFQHKQVEKNVCDEKQECLSSGTVIDERKNAIFDSDIFNNHLKNKDLKRKISPNDNIHNENLQSRQMHRAPPPHNNDGRDHNVEGPFTENNAKEEKFGTNISHLGQYSEIAEKSMEKFVSVISSFRCTSGSRVSGLRAPLKDVRNISDNRPKTVDFGQYAYVAKQTKSRRIAPGN 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4128g00003 694 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Mupr4128g00003 694 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Mupr4128g00003 694 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Mupr4128g00003 694 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Mupr4128g00003 694 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Mupr4128g00003 694 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 368 IPR006084 -
Mupr4128g00003 694 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Mupr4128g00003 694 CDD PIN_EXO1 1 202 IPR044752 GO:0046872
Mupr4128g00003 694 CDD H3TH_EXO1 214 282 IPR037315 GO:0003677|GO:0035312
Mupr4128g00003 694 ProSitePatterns XPG protein signature 1. 71 85 IPR019974 GO:0016788
Mupr4128g00003 694 SMART xpgn3 1 99 IPR006085 GO:0004518
Mupr4128g00003 694 MobiDBLite consensus disorder prediction 591 610 - -
Mupr4128g00003 694 MobiDBLite consensus disorder prediction 575 589 - -
Mupr4128g00003 694 MobiDBLite consensus disorder prediction 396 437 - -
Mupr4128g00003 694 Gene3D - 1 207 - -
Mupr4128g00003 694 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 211 292 IPR036279 -
Mupr4128g00003 694 MobiDBLite consensus disorder prediction 339 364 - -
Mupr4128g00003 694 FunFam Exonuclease 1, putative 1 207 - -
Mupr4128g00003 694 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
Mupr4128g00003 694 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Mupr4128g00003 694 MobiDBLite consensus disorder prediction 568 615 - -
Mupr4128g00003 694 Pfam XPG I-region 141 226 IPR006086 GO:0004518
Mupr4128g00003 694 SMART xpgineu 138 208 IPR006086 GO:0004518
Mupr4128g00003 694 MobiDBLite consensus disorder prediction 344 364 - -
Mupr4128g00003 694 FunFam exonuclease 1 209 281 - -
Mupr4128g00003 694 MobiDBLite consensus disorder prediction 418 437 - -
Mupr4128g00003 694 Gene3D - 209 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4128g00003 Mupr-Chr4128 22221 28333 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4128g00003 1 264 Core DNA Replication Machinery Family AT5G26680 27.437 1.05e-19 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4128g00003 K10746 - gmx:100798062 1188.33