Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4117g00003 ATGGATGCCTTGGACCAGAGTTGGTGGGCCAACATTCCTCACCACCTTCTCAGAGAGGTCCTCCTCCGAATTGAGTCGTCGGAGTCCACGTGGCCGCCGCGGAGGACCGTCGTGGCTTGTGCCGGAGTGTGTCGCACGTGGAGGCTCATCGTCAAGGAGATAGTCAAGCCACCTCAACTCTCTTCAATCATAACCTTCCCCATCTCTCTCAAACAGCCTGGCCCAAGGGAGCATCTACTTAAGTGCTTCATTAGGCGCAACAGTGGCACACAGACATACTATCTATTTCTCAGTATATCTAGTGCACTAGCTGATGACGGGAAGTTCCTTCTGGCTGCACGCAAGTTCAGACGCCCTACCTGCACAGATTATATTATCTCCCTGGATGCAGATATGTCCAGGGAAAGCAATGCCTATGTTGGGAAATTGAGGTGCACTCTTAATCGGGCACTGTTGCCATTATTGTTTCTTATTTTCATGCAAAGACTAACGCGTTTTTCTTCACATTTGATAAGATCAAATTTTTTGGGAACCAAGTTCACAGTCTATGATAGCCAGCTGCATCATGCAGGGGCAAAGATTACAAGAAGTCCTTCCACTAAGCTGGTGAATCCGAAACAAGTTTCATCCAGGGTCCCTACAGGCAACTATCCAGTTGCTCACATCTCATATGAATTGAATGTACTAGGCTCCAGGGGGCCAAGGAGAATGCATTGTGTCATGGACACCATTCCTGCTTCTGTTATTGAACCAGGAGGGATACCCCCTTCACAGACCGATTTTTCTGTTAGTAACATAGATACTTCATCATTCCCATTGTTTCAGACAAACTCAACTAGTCTGCAAAATTCCATATCTGGACACCAGAGCAATAAAAAAGATGATGTGCTAGTGTTGAGAAACAAGGCTGCCAGGTGGCATGAGCAGCTGCAGTGTTGGTGCTTGAACTTTCATGGGCGAGTGACGGTTGCTTCGGTTAAAAACTTTCAGCTGGCTGCTTTGCCAGAAAATGGACTTGCTGGACCACAAGAGGGTGAAGAGGTCATCCTCCAATTTGGAAAAGTTGGGAAGGATTTATTTACAATGGATTATGGGTACCCTATCTCAGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGCTACCACG 1152 0.4705 MDALDQSWWANIPHHLLREVLLRIESSESTWPPRRTVVACAGVCRTWRLIVKEIVKPPQLSSIITFPISLKQPGPREHLLKCFIRRNSGTQTYYLFLSISSALADDGKFLLAARKFRRPTCTDYIISLDADMSRESNAYVGKLRCTLNRALLPLLFLIFMQRLTRFSSHLIRSNFLGTKFTVYDSQLHHAGAKITRSPSTKLVNPKQVSSRVPTGNYPVAHISYELNVLGSRGPRRMHCVMDTIPASVIEPGGIPPSQTDFSVSNIDTSSFPLFQTNSTSLQNSISGHQSNKKDDVLVLRNKAARWHEQLQCWCLNFHGRVTVASVKNFQLAALPENGLAGPQEGEEVILQFGKVGKDLFTMDYGYPISAFQAFAICLSSFATT 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4117g00003 384 Pfam F-box domain 9 55 IPR001810 GO:0005515
Mupr4117g00003 384 SUPERFAMILY Tubby C-terminal domain-like 58 383 IPR025659 -
Mupr4117g00003 384 ProSitePatterns Tub family signature 1. 317 330 IPR018066 -
Mupr4117g00003 384 SUPERFAMILY F-box domain 4 52 IPR036047 GO:0005515
Mupr4117g00003 384 PANTHER TUBBY-RELATED 6 383 - -
Mupr4117g00003 384 Pfam Tub family 171 383 IPR000007 -
Mupr4117g00003 384 Pfam Tub family 70 145 IPR000007 -
Mupr4117g00003 384 CDD F-box_AtTLP-like 9 53 - -
Mupr4117g00003 384 Gene3D Tubby Protein; Chain A 69 382 IPR025659 -
Mupr4117g00003 384 PRINTS Tubby superfamily signature 167 191 IPR000007 -
Mupr4117g00003 384 PRINTS Tubby superfamily signature 299 316 IPR000007 -
Mupr4117g00003 384 PRINTS Tubby superfamily signature 317 333 IPR000007 -
Mupr4117g00003 384 PRINTS Tubby superfamily signature 366 384 IPR000007 -
Mupr4117g00003 384 PRINTS Tubby superfamily signature 216 243 IPR000007 -
Mupr4117g00003 384 PRINTS Tubby superfamily signature 345 364 IPR000007 -
Mupr4117g00003 384 PRINTS Tubby superfamily signature 124 140 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4117g00003 Mupr-Chr4117 7510 9716 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4117g00003 1 383 TUB Transcription Factor Family AT2G47900 62.113 7.16e-169 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mupr4117g00003 Tub 1.5e-74 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4117g00003 K19600 - gmx:100794141 597.816