Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4109g00001 ATGGGTCGTGCAAGAATAACCTTGAAACCTATCTCAAATGAGAGATCTCGCAAGACAACTTTCCAGCAGAGAAAGAAAGGACTAATTAAGAAAATCTCTGAATTTTCCACTATGTGTGGAGTTGAAGCATGTTTTATTGTGTATGATGATGTGAATGGTGACGCTGGACGAGTGACTTGGCCCCAAGATCCCACAATGGTACGCTCCATCATCGAAAATTATGAGCGTCAAAAGAACGAGAGGCCTCCCAAGACCTTTGATATTCAAGACTTTTTCGAGAATAGAAAAAACATGATTGAAGCTGAGATTTCCAAACTGCATAAACAGGCCAGAGAGATCAAGTATCCAACTTGGGATCCAGCTTTCAGTAACATGGGAGAGGAACAATTGAGGGCCTTCATTGCTAAGGTGGATGCTAAGATTGATGATTGTGACCAGAGAATTAACATGTTGAAAAACATGGATCAAACTGAAGCCAACTTCAGTGTCATGCAAAACATGGCTCAGGCAAGTGCTTCCTCCTCCCATCCAAGCCAAGACAATTTCATGCAGAACATATCTCAAAGCCAAATCATCCCTACTCCTATGGAGCCACTACTTATTGATAATAATGGGAGGGTGAATTTTACAAATTCAACATATCAGGTTGGCCGACCTTCTAGTCATGGAATTAACATGTTGAGAAACATGCAACAAAGTGATGCTTGCTTTAGTTACATGCCAAATATGGCTCGGGAAGGATCTACCTCCTCACATCCAATCCAACTCAATTGCTTGCAGAGCAACTCTCAAAGCCAATTCAAACTTGAAACTTTGAAGCCACTCATACAAAATAATGACATGATAGATTTTACTAATCAAGTTTATGTTCCTCTAGATTCAACTAATCAACTTGGTGACCTTGAGCAATGGGTTACTAGACCTATTGGGATTCAGAATTGGTCTAATCAACAAGGTGGTGATCTTGTGGGTTTGACCAGTCAACCTAAAGAATCTATCTTGCAGAATATTCCTGTTAAATCTCAGAATGAGCAACATGGAGTAGTTTTGCCTGCCTTCCCATCATCACTGGATAAATTTCAAACAGATTACTATAATATGCCTGACCTAGCCATATGCTTGGATGAAGGGTTGGTAAATGTGTCTGAAAATAGAAAATATACAAGATGTGTATTTAATAAAAAAAATGAAATGGGTCGATCATTACCGTAA 1212 0.3936 MGRARITLKPISNERSRKTTFQQRKKGLIKKISEFSTMCGVEACFIVYDDVNGDAGRVTWPQDPTMVRSIIENYERQKNERPPKTFDIQDFFENRKNMIEAEISKLHKQAREIKYPTWDPAFSNMGEEQLRAFIAKVDAKIDDCDQRINMLKNMDQTEANFSVMQNMAQASASSSHPSQDNFMQNISQSQIIPTPMEPLLIDNNGRVNFTNSTYQVGRPSSHGINMLRNMQQSDACFSYMPNMAREGSTSSHPIQLNCLQSNSQSQFKLETLKPLIQNNDMIDFTNQVYVPLDSTNQLGDLEQWVTRPIGIQNWSNQQGGDLVGLTSQPKESILQNIPVKSQNEQHGVVLPAFPSSLDKFQTDYYNMPDLAICLDEGLVNVSENRKYTRCVFNKKNEMGRSLP 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4109g00001 403 CDD MADS_SRF_like 2 77 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mupr4109g00001 403 PANTHER MADS BOX PROTEIN 3 140 - -
Mupr4109g00001 403 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mupr4109g00001 403 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mupr4109g00001 403 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Mupr4109g00001 403 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Mupr4109g00001 403 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Mupr4109g00001 403 SUPERFAMILY SRF-like 1 78 IPR036879 GO:0003677|GO:0046983
Mupr4109g00001 403 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4109g00001 Mupr-Chr4109 3359 4945 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4109g00001 1 147 Type I MADS-box Gene Family AT5G55690 34.437 6.83e-22 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr4109g00001 SRF-TF 9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4109g00001 - - ccaj:109809010 453.751