Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4058g00012 ATGGCGATGATGCAAGGCGTGCAGAAGAACACGCTGTACGTGGGGGGGTTAGCGGAGGAGGTGAACGAGTCGATCCTCCACGCGGCGTTCATTCCGTTCGGCGACATCAAGGACGTGAAGACGCCGTTGGACCAGGCCACGCAGAAGCACCGTTCCTTCGGCTTCGTCACCTTCCTCGAGCGTGAGGACGCCTCCTCCGCCATGGACAACATGGACGGTGCCGAGCTCTACGGCCGCGTCCTCACCGTCAATTACGCCCTCCCCGAACGCATCAAGGGCGGCGAGCAGGGCTGGGCCGCTCAGCCTATTTGGGCGGATGCCGATACCTGGTTCGAGCGGCAGCAGCAGGAGGAGGAGATGCGGCGGATTGAGGCGGAAAATCGAGCTGCGATGCAGGCCGCGGAGGACCTGCACAGGAAACAAGTGGCGGAACAGCGGGAGGGAGAGAAGGAAGAGGAAATTGAGGTCAAGGATGATCCTATGGCGAATGCTGAAGCAGAGGAAGTTAGTAGACTTAAAAATATAAGAAATCAACAAGGAGATGTGTTTTTCAAAGCTGCAAGATGTGTTGATAAATTTTTTCGTAAGTAA 591 0.5651 MAMMQGVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASSAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMRRIEAENRAAMQAAEDLHRKQVAEQREGEKEEEIEVKDDPMANAEAEEVSRLKNIRNQQGDVFFKAARCVDKFFRK 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4058g00012 196 MobiDBLite consensus disorder prediction 140 166 - -
Mupr4058g00012 196 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
Mupr4058g00012 196 CDD RRM_PPIE 12 86 IPR034168 GO:0003723
Mupr4058g00012 196 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 88 IPR000504 GO:0003723
Mupr4058g00012 196 FunFam Peptidyl-prolyl cis-trans isomerase 2 155 - -
Mupr4058g00012 196 SMART rrm1_1 11 84 IPR000504 GO:0003723
Mupr4058g00012 196 Gene3D - 3 146 IPR012677 -
Mupr4058g00012 196 PANTHER ATPASE E1 2 170 - -
Mupr4058g00012 196 SUPERFAMILY RNA-binding domain, RBD 8 97 IPR035979 GO:0003676
Mupr4058g00012 196 Coils Coil 113 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4058g00012 Mupr-Chr4058 48877 50886 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4058g00012 10 88 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 6.02e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4058g00012 - - gmx:100809447 302.753