Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4049g00008 ATGGGGAAGGGTAAACCTAGGTCTGTGGAGAAAGGTGTGGTAGGACCTAGTCCGAGTGTTACATCCTTGACTGTACCTTCGGGGCCTGTGTATTACCCTACCGAGGACGAATTCAAGGATCCTTTGGAGTATATCTACAAGATTAGACCCGAGGCTGAGCCTTATGGAATTTGTAAGATTGTGCCTCCCAAGACTTGGAAACCCCCTTTTGCTTTGGATCTTGACTCTTTCACTTTCCCCACCAAGACTCAGGCCATTCACAAGCTCCAGGCACGCCCTGCTGCCTCTGACTCCAAGACCTTTGACTTGGACTACTCTAGGTTTTTGCAGGATCACTCTTCTAAGAAGTCCAGGAAAAGGGTTGTGTTCGAGGGCCAGGAGCTGGACTTGTGTAAGCTATTCAATGCTGTGAAGCGGTTTGGTGGATACGATAAGGTTGTCGATGGAAAGAAATGGGGTGATGTTGCTCGGTTTGTGAGGTCTGGCGGGAAGATTTCGGATTGTGCTAAGCATGTTTTGTGTCAGCTGTATCGGGAGCATTTGTATGATTACGAGAATTTCTATAGCCTGATGAATCAAGGGTCAGCTCAGAGTTGTAAGAAAAGTGTGCATGAGGACCACAAGAGTGATCATGGGGTGCAACCTTTGGCGTTGAAGAAGAATAACAAGAGTGTAGATTGTTCAAAACGTAAGGATAGTAAAGTGCAAGAAGAACATGATCAGATTTGTGAGCAATGTAAAAGTGGTTTGCATGGGGAACGCATGCTTTTGTGTGACAGGTGTGATAAGGGCTGGCATACTTATTGTCTTTGCCCACCATTGAAGCAAATTCCCCCGGGTAATTGGTATTGTTTCAACTGCTTGAATTCTGACAGGGACAGCTTTGGTTTTGTGCCTGGGAAGCACTATACGTTGGAAGCCTTTAGACGCATAGCGGATCGGTCAAGGAGGAGATGGTTTGGATCAGGACCTGTCTCAAGGGTGCAAATAGAGAAAAAATTTTGGGATATTGTGGAAGGATTGGTTGGTGAGGTTGAGGTTATGTATGGAAATGACTTGGATACGTCTGTCTGTGGGAGTGGTTTCCCACGTGTAACTGATCAGAAACCACAATTTATTGATGACAAATTATGGCAAGAATACTCAACTAACCCATGGAATCTTAATAACTTGCCTAAGTTGAAAGGCTCAATGCTTCGAGCTGTTCATCACAATATCACTGGTGTCATGGTACCCTGGCTATATATTGGGATGCTATTCTCATCCTTTTGCTGGCACTTTGAGGATCACTGCTTTTACTCAATGAATTATTTACACTGGGGAGAAGCAAAGTGCTGGTACAGTGTGCCTGGTAGTCACGCCAGTGCTTTTGAGAAGGTGATGAGAAGCAGTCTTCCTGATCTTTTTGATGCACAACCTGATCTGCTTTTTCAGCTTGTTACTATGCTAAACCCATCTGTCTTGCAAGAAAATGGAGTTCCTGTCTACAGCATACTTCAGGAGCCTGGGAATTTTGTTATTACCTTCCCCAAATCTTATCATGGAGGTTTCAATCTTGGATTAAATTGTGCGGAGGCAGTCAATTTTGCTCCTGCTGACTGGCTACCATATGGTGCATTTGGAGCTGATCTCTATCAGCGGTATCACAAAATGGCTGTCTTGTCTCATGAGGAGCTTCTTTGTGTAGTAGCCCAGTATGGTGATGTTGACGGCAGAGTGTCTGCTTATTTGAAGAAGGAATTGTTGAGATTATCAGATAAAGAAAAGTCTTGGAGAGAGAAACTTTGGAAAAATGGTATTATTAAATCTTCTCGCATGGCTCCTCGAAAATGTCCCCAATATGTGGGAACTGAAGAAGATCCAGCATGCATTATCTGCCAGCAATATCTCTATCTCTCTGCTGTTGTATGTGGTTGCAGGCCATCGACTTTTGTTTGTCTGGAGCACTGGGAACATCTTTGTGAATGCAAATCTGTAAAACTACGTCTTCTCTATCGTCATTCACTTGCAGAATTGTATGACCTGGCATTTTCTATGGACAAATATACTTCTGAGGACAAAGCTGAGTGTAGAAGTGTGAAAAGGCAGTCTTCATGTCTTAGTGCTTTGGCCAAAAAGGTGAAAGGTGGCTCCATTACTTTTGCTCAACTTGCTACAGAATGGCTTCTGCAATCAAGTACTATTCTTCAGAACGTTTTTTTGCACGATGCATTTGTTACTGCACTAAGGAAAGCTGAACAATTTCTTTGGGCTGGTTCTGAGATGGATTCTGTTCGAGACATGGTAAAGAATTTGATTGAAGCTCAGAAATGGGCAGAAGGGATAAGAGACTGCATAACAAAAATTGAGTTATGGTTGTGTCATCGGGACTCGAGTGTCAAGAAAGTTCATTTAGAATTCGTTGATGAGTTGCTGAGATTTAGTCCTGCACCATGCAATGAGCCTCGTTATCATAAATTGAAGGAATACGCAGAGGAAGCAAGATCTATAATTCAGGAGATTGATACTGCTTTGTCAATATGTTCAAATATGTCTGAGTTGGAACTTTTATACTCCAAAGCTTGTGGTTTACCCATCTACGTGAAAGAAAGTAAGAAATTAGAAGGGAAAATTTCTTTAACCAAGGCATGGCTGGATAGTGTCAGAAAGTGCATCTCAGCAAAACAACCTGCTGCACTACATGTTGATGTTATTCACAAGTTAAAAGCAGAGTTTGTAGATCTTCAAGTTCAACTCCCAGAGATAGATGTGCTTCAGAATCTATTAAGTCACGCAGAATCTTGTAGTGCTCAATGTCACGATGTGTTAGAAGGTCCTATGAATCTCAAGAATGTTGGTTTGCTGCTTAAGGAATGGGACAATTTCACAGTTGATGTACCAGAGCTCAAGCTTCTAAGGCAATACCATTCGGATGCTGTTTCATGGGTTTCCCACTTTAATGATGTCTTAGGGAGAGTTCACATGCAGGAAGATCAACAGAATGCAGTTGATGAATTGAAGAGCATTTATAAAGAAGTTGATGAGTTGCCATTAGTTGAGATTGAGCTGAAGAAGGCTAATTGCCGGGAAAAGGCTGTGAAGGCACATGATTTGAAGATGCCTCTGGAATTCATTCAGCAACTGTTGAAGGAGGCCACTGTGCTTCAAATTGAGGGAGAGAAACAATTTGTCAATTTATCTTGTGTGCTTGCTATCGCCATGCCTTGGGAGGAAAGGGCCAGAAAGATGCTTTCACATGAGGCTCCTATTTCAGACTTTGAGGACATGATCAGAGCTTCAGAAAACATATTTGTTATTCTTCCTTCACTTAATGATGTCAATGATGCAGTATCAGAAGCTAATTCCTGGTTAAGGAATTCAAAGCCATATTTAGTCTCTTCTACATGTGCTTCAAATTCTGTGCAGAAAATTGAGGACTTGCAGATGTTGGTTTCTCAATCGAAGCATCTTAAAGTATCTTTGGAAGAAAGAGGGATGCTTGAATTAGTTTTGAAGAACTGCAGAATGTGGGAGTATGAAGCATGTTCTCTACTAGATGATGCTCAGTGCTTATTTGAAGTGGATAACTCTCTACATGAAATAAACAGTGATTTGATGTGTAAAGTGGAAGATTTGATTGCAAGAATCCAATCTGCCATAACATCTGGTGTATCACTTGGTTTTGACTTAAATGAGATTTCAAAACTCCAAGCATGTTGTTCTACACTGCAATGGTGCAAAAGAGCCCTGTCTTTCTGCAATTGCTCTCCTTCTTTAGAGGATGTTTTGGAGGTTGCAGAAGGTCTTTCTCATTCCTCTGTTTCTGGTGCTCTGTTGAAAATATTGATTGATGGGTTTGAATGGCTTAGGAAAGCATTAGAGGGGCTTTCTGGACCTCACAAATCTAGAAGATGCAAGTTGACTGATGTACAAGATATCCTTACCGATTATCAGACTGTTAATATGAAATTTACAGCAGTATATTGTCAACTTGAAGATGCCATTGGAAAACATAAGTTATGGCAAGAGCAAGTGCATCAATTTTTTGGTCTAAGTTCCAGAGAACGATCTTGGTCTTCAATATTGCAGCTCAAGGAACATGGAGATGCCATTGCCTTTAGTTGCTCCGAACTGGATTTGATTTTATCTGAAGTTGAGAAGGTGGAAAATTGGAAGAAAAGATGCATGGATAAACTAGGAACTTTAATCCAAAATAGAAATTCGCTACTTGATGCACTGGAGAAGATAAAACAGAATCTAGATAGATCGTTCTATCATTTGCGGTGTGTTGGACTTACAGAAAAAGACGCAGGCATTGAGAACTACAAGTGCCCTTATTGTGAAATTTTGAGGGGTGAATTTCATGATCAGAATGGAGGTGCCCTCCTGAGGTTTGGGAAGAAGCGTGTTGAATTGAAAGTTCTTACTGAGCTCATGATTGATGAAAGAGATGTTTTGCGCCAACTTATTGAGAAAGCCCTTTCATGCAAATCTTGCCTGAGAGAAATTGTGAACGTTGCATCAGCTTATGTTGACAAAGATATTAGCGTTGTCTCTGAAAAATTGTCCACTGCTGCTAGCAAAGTGGCTGTTGTCTATGATCAGTATGATACTTGTAACCTCGAGCTGGCTTTAGCAAAAAACTTTTGGAAAATTCAAGTCAATAGATTGTTAAATGGTGTACCAAAGCCCACTATCCAGCAAATTCAGAAGCATCTGAAGGAGGGACTGGCTATGGACATATCACCTGAAGATCACTATATGTTGAAACTTACAAATGTGAACTGCTTGGGTTTGCAGTGGACAGAACTTGCCAAAAAGGAACAGGTGGCAACTGATTCTGGGGCACTCAGCCTGGATAAAGTTTTTGAACTTATAGTGGAAGGTGAAAACTTGCCTGTTGATGTGAACGAGGAACTAAGGATATTAAGGGCAAGATGCATGCTTTATTGCATTTGTCGAAAGCCCTTTGATCCACAAAGGATGATTGCATGTTGTCATTGTAATGAGTGGTATCACTTTGATTGCATGAAATTGCCATGCACAAGAGAGGTCTACATTTGTCCCGCATGTAACCCGTGTGCAGAAGGATTGCCTTCAAACCATGACAGATTAACTAGTGGTAAATTTGAGGAGCCTAAAACCCCATCTCCCAGGCATTCAAACCCTAGAAAGAAACAGAAGAGAGACGTGCCCAGTCTCACTTGCAACGTGTTCGCAACTACGAATCAAGATAATGAGTTTAGGTATTCGAGTGGGATAGAATGTCTAAGGTGGCAAAATCGAAAGCCTTTCAGAAGAGCAGCTAAGAAACGTGTTGAACTTCGAAATGAAATGAGGTACTTGAAGCCCTTGGAATTGTTTCATGATTTGATTAATACAACCCAAAAGCAACGCGGAAGGTTGCTTGGTTTGGATGTCGGGGATAAATATGTTGGACTTGCTCTTTCTGACTTTGATAACAATATTGCTTCACCTTTCAGCGTTCTCGTCAGGAAGAAGACAAATATTACTTTAATGGCTTCTGATTTTGAGAGTCTGATCTCTAAATATTCCTTGAAGGGCTTTGTTATTGGCATCCCTTTTGACAAACATCGGGTGTCTTCTGATGCTGTGCAAGTGAAGGTCTTCATTGATCACCTCTGTAGAACAAAAATGCTTGAAGGTGTAAAGTATACATATTGGAATGAATGCTTCACCTCAAAGAACGTGGAATTGCTGTTGAAGCCTTTAAACTTGAATCATCCAGTTCTCTCCAAGACTATTCTAGACAAGTTTGCCGCCGTGGGAATACTTCAGAAAATAGAAAAGGAGGCAGAAAATACTTTTAATTTTAATTTATTCATTGAAATAGAC 5835 0.4113 MGKGKPRSVEKGVVGPSPSVTSLTVPSGPVYYPTEDEFKDPLEYIYKIRPEAEPYGICKIVPPKTWKPPFALDLDSFTFPTKTQAIHKLQARPAASDSKTFDLDYSRFLQDHSSKKSRKRVVFEGQELDLCKLFNAVKRFGGYDKVVDGKKWGDVARFVRSGGKISDCAKHVLCQLYREHLYDYENFYSLMNQGSAQSCKKSVHEDHKSDHGVQPLALKKNNKSVDCSKRKDSKVQEEHDQICEQCKSGLHGERMLLCDRCDKGWHTYCLCPPLKQIPPGNWYCFNCLNSDRDSFGFVPGKHYTLEAFRRIADRSRRRWFGSGPVSRVQIEKKFWDIVEGLVGEVEVMYGNDLDTSVCGSGFPRVTDQKPQFIDDKLWQEYSTNPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEAKCWYSVPGSHASAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYSILQEPGNFVITFPKSYHGGFNLGLNCAEAVNFAPADWLPYGAFGADLYQRYHKMAVLSHEELLCVVAQYGDVDGRVSAYLKKELLRLSDKEKSWREKLWKNGIIKSSRMAPRKCPQYVGTEEDPACIICQQYLYLSAVVCGCRPSTFVCLEHWEHLCECKSVKLRLLYRHSLAELYDLAFSMDKYTSEDKAECRSVKRQSSCLSALAKKVKGGSITFAQLATEWLLQSSTILQNVFLHDAFVTALRKAEQFLWAGSEMDSVRDMVKNLIEAQKWAEGIRDCITKIELWLCHRDSSVKKVHLEFVDELLRFSPAPCNEPRYHKLKEYAEEARSIIQEIDTALSICSNMSELELLYSKACGLPIYVKESKKLEGKISLTKAWLDSVRKCISAKQPAALHVDVIHKLKAEFVDLQVQLPEIDVLQNLLSHAESCSAQCHDVLEGPMNLKNVGLLLKEWDNFTVDVPELKLLRQYHSDAVSWVSHFNDVLGRVHMQEDQQNAVDELKSIYKEVDELPLVEIELKKANCREKAVKAHDLKMPLEFIQQLLKEATVLQIEGEKQFVNLSCVLAIAMPWEERARKMLSHEAPISDFEDMIRASENIFVILPSLNDVNDAVSEANSWLRNSKPYLVSSTCASNSVQKIEDLQMLVSQSKHLKVSLEERGMLELVLKNCRMWEYEACSLLDDAQCLFEVDNSLHEINSDLMCKVEDLIARIQSAITSGVSLGFDLNEISKLQACCSTLQWCKRALSFCNCSPSLEDVLEVAEGLSHSSVSGALLKILIDGFEWLRKALEGLSGPHKSRRCKLTDVQDILTDYQTVNMKFTAVYCQLEDAIGKHKLWQEQVHQFFGLSSRERSWSSILQLKEHGDAIAFSCSELDLILSEVEKVENWKKRCMDKLGTLIQNRNSLLDALEKIKQNLDRSFYHLRCVGLTEKDAGIENYKCPYCEILRGEFHDQNGGALLRFGKKRVELKVLTELMIDERDVLRQLIEKALSCKSCLREIVNVASAYVDKDISVVSEKLSTAASKVAVVYDQYDTCNLELALAKNFWKIQVNRLLNGVPKPTIQQIQKHLKEGLAMDISPEDHYMLKLTNVNCLGLQWTELAKKEQVATDSGALSLDKVFELIVEGENLPVDVNEELRILRARCMLYCICRKPFDPQRMIACCHCNEWYHFDCMKLPCTREVYICPACNPCAEGLPSNHDRLTSGKFEEPKTPSPRHSNPRKKQKRDVPSLTCNVFATTNQDNEFRYSSGIECLRWQNRKPFRRAAKKRVELRNEMRYLKPLELFHDLINTTQKQRGRLLGLDVGDKYVGLALSDFDNNIASPFSVLVRKKTNITLMASDFESLISKYSLKGFVIGIPFDKHRVSSDAVQVKVFIDHLCRTKMLEGVKYTYWNECFTSKNVELLLKPLNLNHPVLSKTILDKFAAVGILQKIEKEAENTFNFNLFIEID 1945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4049g00008 1945 MobiDBLite consensus disorder prediction 1698 1724 - -
Mupr4049g00008 1945 Gene3D Cupin 215 552 - -
Mupr4049g00008 1945 Pfam jmjN domain 29 62 IPR003349 -
Mupr4049g00008 1945 Hamap Putative pre-16S rRNA nuclease [yqgF]. 1793 1933 IPR005227 GO:0006364
Mupr4049g00008 1945 MobiDBLite consensus disorder prediction 1 20 - -
Mupr4049g00008 1945 SUPERFAMILY ARID-like 78 199 IPR036431 GO:0003677
Mupr4049g00008 1945 FunFam Putative pre-16S rRNA nuclease 1792 1938 - -
Mupr4049g00008 1945 FunFam Transcription factor jumonji (JmjC) domain-containing protein 14 118 - -
Mupr4049g00008 1945 ProSiteProfiles JmjC domain profile. 380 546 IPR003347 -
Mupr4049g00008 1945 SMART cupin_9 380 546 IPR003347 -
Mupr4049g00008 1945 Pfam PLU-1-like protein 1205 1388 IPR013637 -
Mupr4049g00008 1945 Pfam PLU-1-like protein 889 1171 IPR013637 -
Mupr4049g00008 1945 Pfam C5HC2 zinc finger 623 674 IPR004198 -
Mupr4049g00008 1945 ProSiteProfiles Zinc finger PHD-type profile. 240 290 IPR019787 -
Mupr4049g00008 1945 ProSitePatterns Zinc finger PHD-type signature. 243 287 IPR019786 -
Mupr4049g00008 1945 SMART bright_3 96 190 IPR001606 GO:0003677
Mupr4049g00008 1945 SMART PHD_3 242 288 IPR001965 -
Mupr4049g00008 1945 SMART PHD_3 1643 1685 IPR001965 -
Mupr4049g00008 1945 SUPERFAMILY FYVE/PHD zinc finger 1638 1689 IPR011011 -
Mupr4049g00008 1945 CDD ARID 97 185 - -
Mupr4049g00008 1945 SUPERFAMILY Clavaminate synthase-like 366 561 - -
Mupr4049g00008 1945 SMART JmjN_1 27 68 IPR003349 -
Mupr4049g00008 1945 ProSiteProfiles ARID domain profile. 95 189 IPR001606 GO:0003677
Mupr4049g00008 1945 MobiDBLite consensus disorder prediction 1698 1712 - -
Mupr4049g00008 1945 ProSiteProfiles JmjN domain profile. 28 69 IPR003349 -
Mupr4049g00008 1945 SMART ARID_2 92 185 - -
Mupr4049g00008 1945 Gene3D - 1792 1939 IPR037027 GO:0006139
Mupr4049g00008 1945 ProSitePatterns Zinc finger PHD-type signature. 1644 1684 IPR019786 -
Mupr4049g00008 1945 CDD PHD_RSF1 243 287 - -
Mupr4049g00008 1945 SUPERFAMILY FYVE/PHD zinc finger 232 290 IPR011011 -
Mupr4049g00008 1945 Gene3D Cupin 16 129 - -
Mupr4049g00008 1945 Pfam ARID/BRIGHT DNA binding domain 101 185 IPR001606 GO:0003677
Mupr4049g00008 1945 PANTHER LYSINE-SPECIFIC DEMETHYLASE 25 998 - -
Mupr4049g00008 1945 SUPERFAMILY Ribonuclease H-like 1793 1927 IPR012337 -
Mupr4049g00008 1945 Pfam JmjC domain, hydroxylase 413 529 IPR003347 -
Mupr4049g00008 1945 CDD YqgF 1795 1926 IPR005227 GO:0006364
Mupr4049g00008 1945 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1630 1686 IPR013083 -
Mupr4049g00008 1945 Pfam Holliday junction resolvase 1794 1927 IPR005227 GO:0006364
Mupr4049g00008 1945 SMART rnase_8s 1793 1897 IPR006641 GO:0006139
Mupr4049g00008 1945 Pfam PHD-finger 242 289 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4049g00008 Mupr-Chr4049 81353 111845 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4049g00008 37 92 JUMONJI Transcription Factor Family AT4G20400 50.000 1.10e-09 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mupr4049g00008 PLU-1 8.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4049g00008 K11446 - gmx:100789512 3262.24